PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_07735 | ||||||||
Common Name | KK1_007948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22283.8 Da PI: 9.4615 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67 | 1.9e-21 | 4 | 52 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n++n qvtfsk r g++KKA+EL++LC+a+va+i+fs+ k++ + C.cajan_07735 4 KKMSNETNLQVTFSKGRSGLFKKASELCILCGADVALIVFSPGEKVFSF 52 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.06E-24 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-25 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.923 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.69E-32 | 2 | 65 | No hit | No description |
Pfam | PF00319 | 1.9E-22 | 6 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-9 | 18 | 33 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-9 | 33 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MEMKKMSNET NLQVTFSKGR SGLFKKASEL CILCGADVAL IVFSPGEKVF SFGHPNVDVV 60 IDRYLAPGPL PNSSTMHFIE AHRIANVRGE DLAHLKKAIR AQLWWASPIE EMTRAQLEQY 120 KVALEELKKR VACLVDRAML QSIPNPTHQL FLFPGASSFP NPNLVHQPPM LHNYTNRHHR 180 FNNMGFPGYG YGSTAAFF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_07735 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020233190.1 | 1e-149 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-42 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A151U7G7 | 1e-147 | A0A151U7G7_CAJCA; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA20G27330.1 | 3e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-45 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|