PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_06286

Common Name

KK1_006463

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Trihelix

Protein Properties

Length: 542aa MW: 62672.2 Da PI: 7.1912

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_06286	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.2	5.2e-29	137	222	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+ + +++++f+qlea C.cajan_06286 137 RWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 222 8***********************************999*************************985..5557*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	130	195	IPR017877	Myb-like domain
Pfam	PF13837	3.0E-20	137	223	No hit	No description
CDD	cd12203	2.67E-20	137	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MEMEDHHHHH HHLHHQHQQQ QQHQQQHFNI NMNMNDLRQV LNGPRPPHNN LPSMPPVLFP 60 GHHRNLGPTP LPSPQQHHYE VMMFGRDIMP PGLHDFASTT HDSSAATTVA AVPTPPATSA 120 FDAEGAACIG ADPSTGRWPR QETLTLLEIR SRLDPKFKEA NHKGPLWDEV SRIMSEEHGY 180 QRSGKKCREK FENLYKYYKK TKEGKAGRHD GKHYRFFRQL EALYGENSNT VSVPETNVVG 240 TIHFQASSHA PSQTNQEKFQ SHNNKHCDSL SLTNSTNFDT SSSEDDEYDH SMENESMEKR 300 RKRKSGRSWK VKIKDFIDSQ MRKLVEKQKE WLDKLVKTLE EKEKDRMLRE EEWRKQEANR 360 LEREQKFWAK ERAWIEARDS ALMEALQKLT GTQIMKDETH SEGINAVAAE VQNQNNEDGS 420 EILNSNTIIR EKWESMSNNY SREDNKEGNK KRKENSRTSF YFKNDDDQQS SLYDHGSAYC 480 GDMNDQGKVI ERLQRNNGSS PSKSNVGNVA PSDSCFPFLM SAEGGNLWEN YGLKFNKANQ 540 NH

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MEMEDHHHHH HHLHHQHQQQ QQHQQQHFNI NMNMNDLRQV LNGPRPPHNN LPSMPPVLFP  60
GHHRNLGPTP LPSPQQHHYE VMMFGRDIMP PGLHDFASTT HDSSAATTVA AVPTPPATSA  120
FDAEGAACIG ADPSTGRWPR QETLTLLEIR SRLDPKFKEA NHKGPLWDEV SRIMSEEHGY  180
QRSGKKCREK FENLYKYYKK TKEGKAGRHD GKHYRFFRQL EALYGENSNT VSVPETNVVG  240
TIHFQASSHA PSQTNQEKFQ SHNNKHCDSL SLTNSTNFDT SSSEDDEYDH SMENESMEKR  300
RKRKSGRSWK VKIKDFIDSQ MRKLVEKQKE WLDKLVKTLE EKEKDRMLRE EEWRKQEANR  360
LEREQKFWAK ERAWIEARDS ALMEALQKLT GTQIMKDETH SEGINAVAAE VQNQNNEDGS  420
EILNSNTIIR EKWESMSNNY SREDNKEGNK KRKENSRTSF YFKNDDDQQS SLYDHGSAYC  480
GDMNDQGKVI ERLQRNNGSS PSKSNVGNVA PSDSCFPFLM SAEGGNLWEN YGLKFNKANQ  540
NH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_06286

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020222752.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-96	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A151U3D4	0.0	A0A151U3D4_CAJCA; Uncharacterized protein
STRING	XP_007145244.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	9e-91	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]