PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05363 | ||||||||
Common Name | KK1_005496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 400aa MW: 45861.6 Da PI: 9.136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 101 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+++vk +G + W+ Ia+++ gR +kqc++rw+++l C.cajan_05363 101 KGQWNKEEDRKLIRLVKIYGHRKWAEIAEKLE-GRVGKQCRERWNNHL 147 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 153 | 195 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W +eE+++lvd +++lG++ W Ia+ ++ gR+++ +k++w+ C.cajan_05363 153 KDSWNEEEEKILVDSHARLGNR-WCEIAKLIP-GRSENAIKNHWN 195 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.048 | 96 | 151 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.98E-27 | 98 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-16 | 100 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 102 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-15 | 104 | 147 | No hit | No description |
Pfam | PF13921 | 1.6E-17 | 104 | 162 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 152 | 200 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.579 | 152 | 202 | IPR017930 | Myb domain |
CDD | cd00167 | 5.49E-11 | 155 | 195 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 156 | 200 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MDVMVRGGSH GANDFQIYGC ESKPSLTTAI GIDRFLRGHF PHQQQQLAKN NDASVFAEEA 60 LKWTNPNQTP KLCLKDIQVS GKNVKLVGRR SKKHSSVPWI KGQWNKEEDR KLIRLVKIYG 120 HRKWAEIAEK LEGRVGKQCR ERWNNHLRPD IKKDSWNEEE EKILVDSHAR LGNRWCEIAK 180 LIPGRSENAI KNHWNATIRR QNSKRKNKKT KRSNGKPHSS VLEDYIRSKT TSINPKPGII 240 TATDTNLTTT LSQDNAPNPN LNPVFPEPFV NEALFMQQVF MDNNQNHRSL DNVEASKYSS 300 KMCPTPISYL DYCQTNVDDA GECGFVYSLQ YQDNMHLIND SLFPRETHTS HLNYLHSDPY 360 LSHSLNVEPG YGNQNLNIDF RHHGCSQGKA EMDLIEFVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-43 | 100 | 201 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-43 | 100 | 201 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-43 | 100 | 201 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-44 | 100 | 201 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-44 | 100 | 201 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05363 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020228826.1 | 0.0 | transcription factor MYB64 | ||||
TrEMBL | A0A151U0N9 | 0.0 | A0A151U0N9_CAJCA; Transcription factor MYB98 | ||||
STRING | GLYMA14G37140.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-53 | myb domain protein 119 |