PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_01593 | ||||||||
Common Name | KK1_001632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24133.8 Da PI: 5.966 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g C.cajan_01593 51 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 100 69****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.27E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.024 | 51 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 51 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 51 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-29 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 6.1E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDMEQSNPLE SEVQPTTSSS SSITITCSNE EATKEKKKKK KRGNNEGKHP TYRGVRMRQW 60 GKWVSEIREP RKKSRIWLGT FPTPDMAARA HDVAALTIKG SSAYLNFPEL AAELPRPATT 120 SPKDIQVAAA KAAVLDFGHR SHEAESELSR AVSSSSLTQA SSSSNCSLNG EDDTFLDLPD 180 LSLDLTHGGA DEFHYSSAWL VAGAEQGFRL EEPFLWESY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 49 | 108 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | KKKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_01593 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF551166 | 1e-176 | EF551166.1 Glycine max dehydration-responsive element binding protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029129065.1 | 1e-162 | ethylene-responsive transcription factor ERF038 isoform X1 | ||||
Refseq | XP_029129066.1 | 1e-162 | ethylene-responsive transcription factor ERF038 isoform X2 | ||||
Swissprot | Q8LBQ7 | 9e-62 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A151SKZ1 | 1e-161 | A0A151SKZ1_CAJCA; Ethylene-responsive transcription factor ERF034 family | ||||
STRING | XP_007155687.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-48 | ERF family protein |
Publications ? help Back to Top | |||
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