PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_01440
Common NameKK1_001474
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 350aa    MW: 39458.9 Da    PI: 5.4607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_01440genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.15.9e-5261361128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++
  C.cajan_01440   6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC 100
                    79****************************.99**************95334445667*************************************9 PP

            NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +   ++++g +ktLvfy grap g +tdWvmheyrl
  C.cajan_01440 101 QsnPSTVTGYRKTLVFYLGRAPLGDRTDWVMHEYRL 136
                    86556779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-604159IPR003441NAC domain
PROSITE profilePS5100557.6946159IPR003441NAC domain
PfamPF023651.6E-297136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKVEG LEIELEVIPV IDFYKFDPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSNPSTVTGY RKTLVFYLGR  120
APLGDRTDWV MHEYRLCDEL GQATPCFQGS FALCRVIKKN EKASASHVEH KGKRAGSSSM  180
KGSDTSMRFS SEPFSNSGDA SSQASHLNND SRYSSPITSP SNVAPMGEFN QPSVETNPSN  240
FWISPDMILD SSKDYPQLQD AVAEYFPRYD LPSVMTPWQS LEHPETSSSL SYSNFNGEVE  300
FSDNLSQIGC MSPYSRQWNS MGFYGSGNGN GDVPYEGYDL INSISYPEPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-51516316169NO APICAL MERISTEM PROTEIN
1ut4_B8e-51516316169NO APICAL MERISTEM PROTEIN
1ut7_A8e-51516316169NO APICAL MERISTEM PROTEIN
1ut7_B8e-51516316169NO APICAL MERISTEM PROTEIN
4dul_A8e-51516316169NAC domain-containing protein 19
4dul_B8e-51516316169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_01440
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-124AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227944.10.0NAC domain-containing protein 71
SwissprotO496971e-106NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A151SKE40.0A0A151SKE4_CAJCA; NAC domain-containing protein 78
STRINGGLYMA05G23840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-109NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]