PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01166

Common Name

KK1_001196

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 260aa MW: 28990 Da PI: 9.1842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01166	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.4e-05	167	204	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++++L++l+ + +K s a++L +A+ YI+ L C.cajan_01166 167 RKEKLGDRIQTLQRLVAPF-----GKTSTASVLSEAIGYIHFL 204 7788999*******998.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.585	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-5	165	209	No hit	No description
SuperFamily	SSF47459	8.9E-11	165	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-8	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEESSLVPIH EPRYSPSFLS SLRVTGEEFF LAENNAYHDD KPIDGGTLSK RYNNFGDVSL 60 NWNLPTLDMT SSLVSCSLGL NPKMLDLHTS NHALQPCYNT FGLNESMSLS YGDMHGRENS 120 SSNSSNKISS FTREVAMTKR PGNCSLPKES EAKAKKSRPS CPPLKVRKEK LGDRIQTLQR 180 LVAPFGKTST ASVLSEAIGY IHFLHQQVQT LSIPYMKSVQ TKPSRMVQLD SNSRELKPDL 240 RSRGLCLVPL SYASFVHRCV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01166

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020228134.1	0.0	transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	6e-35	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A151SJH8	0.0	A0A151SJH8_CAJCA; Transcription factor bHLH110 family
STRING	GLYMA16G24661.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]