PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_00971

Common Name

KK1_000999

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 302aa MW: 33949.4 Da PI: 10.169

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_00971	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.6e-31	236	294	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYeg+Hnh+k C.cajan_00971 236 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGDHNHPK 294 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.3E-16	187	232	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-33	222	294	IPR003657	WRKY domain
PROSITE profile	PS50811	29.746	229	295	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-27	232	294	IPR003657	WRKY domain
SMART	SM00774	9.1E-38	234	294	IPR003657	WRKY domain
Pfam	PF03106	5.3E-27	236	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEVEEANRA AVESCHRVLN VLSRQGDEVQ YRNLVVETGE AVVRFKNVVS KLSSGLGHAR 60 VRKSKKLNIP FSPSILLDNL TCKTDHHSKN LHQQTSSTHY HILQQQQQRL LLQQQQQQMK 120 HQAEMMFRRN SSVINLNFDS SSCTPSMSST RSFISSLSID GSVANMDGSA FHLLGAANSD 180 QNSQQHKRKC SARGDEGSVK CGSSTRCHCS KKRKHRVKRS IKVPATSNKL ADIPPDDYSW 240 RKYGQKPIKG SPHPRGYYKC SSMRGCPARK HVERCLEEPS MLIVTYEGDH NHPKLPTQSA 300 NA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	227	296	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_00971

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU375352	0.0	EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020225556.1	0.0	probable WRKY transcription factor 21
Refseq	XP_029129476.1	0.0	probable WRKY transcription factor 21
Swissprot	Q9SR07	3e-98	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A151SJ36	0.0	A0A151SJ36_CAJCA; Putative WRKY transcription factor 39
STRING	GLYMA02G15920.1	1e-166	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	4e-83	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]