PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00661
Common NameKK1_000680
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 273aa    MW: 31675.9 Da    PI: 7.4466
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00661genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36261172102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i
  C.cajan_00661  26 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLLCEI 112
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k+
  C.cajan_00661 113 HRRKT 117
                    ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.99E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAFTLDRFEE NMVFTLESQK SVPAPFLTKT YQLVDDPHTD HIVSWGEDET TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGAKHLLC EIHRRKTPQQ  120
HHQLFHHDQQ SPSQILQQDE SLCWLDTPLP SPKPSTDILT ALSEDNQRLR RKNFMLLSEL  180
SHMKSLYNDI IYFIQNHIKP APFEQRSSSA AIAKLVELDS LHGSPIDMGV LRSSKSCIVD  240
KSLISSYEES NSSVKLFGVP LSGRKRLHPD NTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-212111716122Heat shock factor protein 1
5d5u_B2e-212111725131Heat shock factor protein 1
5d5v_B2e-212111725131Heat shock factor protein 1
5d5v_D2e-212111725131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969820.0BT096982.1 Soybean clone JCVI-FLGm-21M20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228892.10.0heat stress transcription factor B-4b
SwissprotQ9C6352e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A151SI680.0A0A151SI68_CAJCA; Heat stress transcription factor B-4
STRINGGLYMA20G08250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-88heat shock transcription factor B4