PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_016580_roou.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 176aa    MW: 19758.1 Da    PI: 6.6271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_016580_roou.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000282446123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cg+ F +   L  H++ H
  Bv_016580_roou.t1 24 FVCKYCGRIFLNAQALGGHQNAH 46
                       89***********9999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-72151No hitNo description
Gene3DG3DSA:3.30.160.604.3E-42250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8432451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDMQGSKNYD NSSSKPKSIP HKLFVCKYCG RIFLNAQALG GHQNAHKKEK QEAQIYKEEI  60
MRSMMMANPA TLLFPYSVIQ PHGVAQHQIT AADYPSFSRA WSSNSLVVGS SSQYPHPVTS  120
NYWPGSYRLE DRSGTPYSHV PDVGSTEEIQ EKQIEKESTP ITQESELPDL NLDPPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668422.11e-130PREDICTED: zinc finger protein 7
TrEMBLA0A0J8DUZ71e-129A0A0J8DUZ7_BETVU; Uncharacterized protein
STRINGXP_010668422.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-11C2H2 family protein