PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_007880_mscr.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C2H2 | ||||||||
Protein Properties | Length: 406aa MW: 45560.3 Da PI: 7.6142 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.7 | 5.1e-07 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r nL+ H+r+H Bv_007880_mscr.t1 239 HYCQVCGRGFKRDANLRMHMRSH 261 68********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.35E-5 | 238 | 262 | No hit | No description |
SMART | SM00355 | 0.0029 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 239 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 4.5E-5 | 239 | 261 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.635 | 239 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 80 | 292 | 325 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 200 | 330 | 351 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MIHQDQVAFP CFTASAVAVA NAPSYDGGAE GSQTQLMRSL FYNLLTLKQK VNEVESVAMQ 60 AACHSEYYGQ PVDEVASSMA VSSLANLMQE IVQTASFMML SCEQMALVSV QACNSSGSST 120 THMRADQESY FMQKPDDGVL DISVGAVNNQ GFLGGDDAYN NWYTHETSYN NNCVRVEGSR 180 STTTRTTSTT TATATTVEEE GSVYQYQASN NMNQESEVLE EAYDVVELEA ADLLARYTHY 240 CQVCGRGFKR DANLRMHMRS HGVQYKSSLI SNPMNNRSEE SKMTTKKPWR KYSCPQQGCR 300 WNKNHVKFQP LKSIVCVKNH YKRSHCPKMF LCKKCNRKQF SVLSDLKMHE KYCGNIKWRC 360 SCGITFFQKD KLMDHVALFA GHSPLSKPLV INSDNTVDNY QHGGVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667301.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0J8B6F7 | 0.0 | A0A0J8B6F7_BETVU; Uncharacterized protein | ||||
STRING | XP_010667301.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-85 | C2H2 family protein |