PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007880_mscr.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 406aa    MW: 45560.3 Da    PI: 7.6142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007880_mscr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.1e-07239261123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cg+ F+r  nL+ H+r+H
  Bv_007880_mscr.t1 239 HYCQVCGRGFKRDANLRMHMRSH 261
                        68********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-5238262No hitNo description
SMARTSM003550.0029239261IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5239261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.5E-5239261IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.635239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SMARTSM0035580292325IPR015880Zinc finger, C2H2-like
SMARTSM00355200330351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MIHQDQVAFP CFTASAVAVA NAPSYDGGAE GSQTQLMRSL FYNLLTLKQK VNEVESVAMQ  60
AACHSEYYGQ PVDEVASSMA VSSLANLMQE IVQTASFMML SCEQMALVSV QACNSSGSST  120
THMRADQESY FMQKPDDGVL DISVGAVNNQ GFLGGDDAYN NWYTHETSYN NNCVRVEGSR  180
STTTRTTSTT TATATTVEEE GSVYQYQASN NMNQESEVLE EAYDVVELEA ADLLARYTHY  240
CQVCGRGFKR DANLRMHMRS HGVQYKSSLI SNPMNNRSEE SKMTTKKPWR KYSCPQQGCR  300
WNKNHVKFQP LKSIVCVKNH YKRSHCPKMF LCKKCNRKQF SVLSDLKMHE KYCGNIKWRC  360
SCGITFFQKD KLMDHVALFA GHSPLSKPLV INSDNTVDNY QHGGVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667301.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0J8B6F70.0A0A0J8B6F7_BETVU; Uncharacterized protein
STRINGXP_010667301.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-85C2H2 family protein