PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_174490_mcjg.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 25076.1 Da PI: 6.1654 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ Fs+ L H +H Bv7_174490_mcjg.t1 47 FACKTCGRKFSSFQALGGHRASH 69 78**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.2E-7 | 45 | 115 | No hit | No description |
SMART | SM00355 | 0.26 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.0E-10 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.803 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-9 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.6 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MNNNRGGAGE IETFAMANCL MLLSSHNATM AASIGGSVGN EENGRMFACK TCGRKFSSFQ 60 ALGGHRASHK KVKSANSGEF SDEANFPAKP KVHVCSICFV EFPIGQALGG HMRRHRGMTV 120 AAVTGGSAAI SSVTTEGSIG NSDGNNDNNN GEKKRKINDD VVLEVPTAVR KSSSKRVCMD 180 VDLNLMLWRK EEKVVEEEDN NVDHEVEEGE IVEQGNDDDF LKLELRQPIR F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685828.1 | 1e-171 | PREDICTED: zinc finger protein ZAT12 | ||||
TrEMBL | A0A0K9QZC0 | 3e-69 | A0A0K9QZC0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685828.1 | 1e-170 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 5e-27 | C2H2 family protein |