PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_111450_aqwk.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 26905.2 Da PI: 8.3904 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Bv5_111450_aqwk.t1 44 YSCNFCKREFRSAQALGGHMNVH 66 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-6 | 41 | 71 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0072 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.3E-6 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEQSPCWMLA NRGPRCPDDS WEEKAFADDA AGLLGGCVWP PRSYSCNFCK REFRSAQALG 60 GHMNVHRRDR ARLKQLSNFQ HLDQRLDPHR NSQSFSIEKT PHKQIDIVTD PMFVSINQTI 120 FSPQSQFVSS FLVSNDENLT FLGLRKDGKS RKSQCEIRKN IEIASSSLDL DGQASVVHNT 180 GASNRHKRRK LDISYPPSIN KSHKIDDEAP KADASTPEDL DLELRLGDRP KVQQNFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 39 | 66 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 39 | 66 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678076.1 | 1e-178 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
STRING | XP_010678076.1 | 1e-177 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-23 | C2H2 family protein |