PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_092260_ddzu.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C2H2 | ||||||||
Protein Properties | Length: 499aa MW: 54368.5 Da PI: 9.5401 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.2e-05 | 266 | 288 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+++F+ ++ L+ H + H Bv4_092260_ddzu.t1 266 TCHKCKEHFNKWDALEAHHLSnH 288 8*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 267 | 288 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.09E-19 | 290 | 498 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEGGGKNGKG KKQQGKENNK PNVWFSLKKS LHCKSEASDV HEPKSKSSLS KSKNHHNHNH 60 NDNDNSMMNS ILTRRVGRSG CSRSIANLKD VIHGNSKRHI EKPPSCSPRS IGSSEFLNPI 120 THEVILSNSR CELKITGYAP FGNCTDGLGS IGGGGGGAAT ERATAATATA TAANGGREES 180 TFVGTLRPGT PGPGGHPTMH YFNNNNNPLF GKNSGMGMGM PRKSFSVERE TEIFGNGGSS 240 SGINNSRKRF SLEIDSNGSS HTQHLTCHKC KEHFNKWDAL EAHHLSNHAV TELVEGDSSR 300 KIVEIICRTS WLKSENHCGR IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA 360 DGNELLRFYG TTVACSLGID GSSSLCISEK CCVCRIIRHG FYTKKEIKSG VGVFTTSTSG 420 RAFEGIEFFD DDASIKKALI VCRVIAGRVH RPLENVQELA GQTGFDSLAG KVGLYSSIEE 480 LYLLNPRALL PCFVVICKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694273.1 | 0.0 | PREDICTED: uncharacterized protein LOC104907097 | ||||
TrEMBL | A0A0K9R2T8 | 0.0 | A0A0K9R2T8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694273.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-125 | C2H2 family protein |