PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_092260_ddzu.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 499aa    MW: 54368.5 Da    PI: 9.5401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_092260_ddzu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-05266288223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C++C+++F+ ++ L+ H  + H
  Bv4_092260_ddzu.t1 266 TCHKCKEHFNKWDALEAHHLSnH 288
                         8*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280267288IPR007087Zinc finger, C2H2
SuperFamilySSF563991.09E-19290498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEGGGKNGKG KKQQGKENNK PNVWFSLKKS LHCKSEASDV HEPKSKSSLS KSKNHHNHNH  60
NDNDNSMMNS ILTRRVGRSG CSRSIANLKD VIHGNSKRHI EKPPSCSPRS IGSSEFLNPI  120
THEVILSNSR CELKITGYAP FGNCTDGLGS IGGGGGGAAT ERATAATATA TAANGGREES  180
TFVGTLRPGT PGPGGHPTMH YFNNNNNPLF GKNSGMGMGM PRKSFSVERE TEIFGNGGSS  240
SGINNSRKRF SLEIDSNGSS HTQHLTCHKC KEHFNKWDAL EAHHLSNHAV TELVEGDSSR  300
KIVEIICRTS WLKSENHCGR IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA  360
DGNELLRFYG TTVACSLGID GSSSLCISEK CCVCRIIRHG FYTKKEIKSG VGVFTTSTSG  420
RAFEGIEFFD DDASIKKALI VCRVIAGRVH RPLENVQELA GQTGFDSLAG KVGLYSSIEE  480
LYLLNPRALL PCFVVICKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694273.10.0PREDICTED: uncharacterized protein LOC104907097
TrEMBLA0A0K9R2T80.0A0A0K9R2T8_SPIOL; Uncharacterized protein
STRINGXP_010694273.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-125C2H2 family protein