PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_072350_apsk.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 413aa    MW: 47209.7 Da    PI: 7.4622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_072350_apsk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019250269120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C ++F+r  n++ H+
  Bv4_072350_apsk.t1 250 FSCPLCFRTFNRYNNMQMHM 269
                         89*****************9 PP

2zf-C2H212.70.00038334354121
                         EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                         + C +Cgk+F  + + ++H +
  Bv4_072350_apsk.t1 334 FACRKCGKPFAVRGDWRTHEK 354
                         78*****************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.1250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473250277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4250269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-6316354No hitNo description
Gene3DG3DSA:3.30.160.605.0E-5321354IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578334354IPR015880Zinc finger, C2H2-like
SMARTSM00355180360383IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSDNPYFNHH HHHHHYATGF LNSSNYPSFN HFFPTTNNNN FSTLSNNNNN NNNNPYDYNF  60
FFSNTFINNN NNTSQDFNIS SKSPPSPPLR EALPLFSSSP VRNNNNNYHI NLNEDDYCNN  120
NNNSNEDQFE EFSSTTLHLG LPSCSAADLI SASLSSSSTT SDHHHMMNNN HSNNNNNNKK  180
CMNNNMMMMM MMNNEDSSRS EEVTVASSYN NNNNNNSSLI GGYCNSIGTV NKGQYWIPTP  240
AQILIGPTQF SCPLCFRTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA  300
PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFACRKCG KPFAVRGDWR THEKNSGKLW  360
YCTCGSDFKH KRSLKDHIKS FGHGHAPYGI DCFDEEDEPA SEIEQDNEIE SNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673606.20.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1R3I6D51e-149A0A1R3I6D5_9ROSI; Uncharacterized protein
STRINGXP_010673606.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]