PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G122000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 298aa    MW: 31704.8 Da    PI: 7.2246
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G122000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.7e-304107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++
  Brast10G122000.1.p   4 SCNGCRVLRKGCSEGCTIRPCLewiksPEAQANATVFLAKFYGRAGLLNLLAAGPDDLRPALFRSLLYEACGRMVNPIYGSVGLLWSGRWE 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                          +q+++e++l +e
  Brast10G122000.1.p  95 ACQAAVEAVLKGE 107
                         ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLEWIKS PEAQANATVF LAKFYGRAGL LNLLAAGPDD  60
LRPALFRSLL YEACGRMVNP IYGSVGLLWS GRWEACQAAV EAVLKGEPVV QVSSEAVPAA  120
QATPPLRAYD IRHVAKDPEA GPLRVSRAGR TRFKRASSST SKSNKSAKSV SPAARQEPEQ  180
HDDHGRAPSR EPCREESAGS HSHGHVDDEG MMTGVEQTRE DSGQDTEVEA GSHVSQAEQS  240
RPAPPMQQIV HEEIGLELTL GLEPAVTRLA RSPVARLDVG GLSAASSHIG LGLGMPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G122000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954391e-146FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310952.10.0LOB domain-containing protein 42
SwissprotQ9M8867e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1IL930.0I1IL93_BRADI; Uncharacterized protein
STRINGBRADI4G16750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-69LOB domain-containing protein 41