PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G258700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 237aa MW: 24087.3 Da PI: 8.1232 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.8 | 3.5e-36 | 51 | 109 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k+++++cprC s ntkfCyynnys++qPr+fC+aCrryWt+GG+lrnvPvGg++r +++ Brast09G258700.1.p 51 KQQQVECPRCGSGNTKFCYYNNYSTAQPRHFCRACRRYWTHGGSLRNVPVGGACRSRHR 109 5799***************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-22 | 52 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-31 | 53 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.661 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPDAAASSL RLPAAATGSS AGTLPDQAPP LLPQGDHQAA AVNGNGNGNG KQQQVECPRC 60 GSGNTKFCYY NNYSTAQPRH FCRACRRYWT HGGSLRNVPV GGACRSRHRD AAASGNANNN 120 NKRRSRRAGS DNSSSSSAAP PSAAPNQLPP TAALMFPFLS DGAAFFLPPQ YDLGLGAGSA 180 AATPSAFSWP LYDGGLGAAP WDDGTLSGAA AGATPGAWGE DEFTGLDLSW PPPAGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G258700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 3e-45 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580828.1 | 1e-84 | dof zinc finger protein DOF1.7 | ||||
TrEMBL | I1J3D7 | 3e-83 | I1J3D7_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G26240.1 | 5e-84 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 9e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G258700.1.p |