PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G253200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 703aa    MW: 79256.6 Da    PI: 5.7894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G253200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07110133327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +f++ G C  Gd+C+F Hgp
  Brast09G253200.1.p 110 MVPCYYFQK-GNCVKGDKCPFYHGP 133
                         789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7092655IPR000571Zinc finger, CCCH-type
SMARTSM003560.00512754IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-122883No hitNo description
PROSITE profilePS5010311.5075783IPR000571Zinc finger, CCCH-type
SMARTSM003560.25982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986107134IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6107133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4112133IPR000571Zinc finger, CCCH-type
PfamPF146080.09112132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEAADGAAAE AGVPAAKPLT PEEEALRRNT DCVYFLASPL TCKKGNECDF RHSEIARMNP  60
RDCWYWLNGN CLNPKCSFRH PPIDGMFGAP TPGIPAVSSH YAAYNLGKQM VPCYYFQKGN  120
CVKGDKCPFY HGPQSTGNNP PEQVAKVSSF PLEQPQTQKN DLLGIRESAR TNNLIQRGGT  180
IIDDRSKMAV NRPTANSAKT PADAIPAELA SSALKPLPKS EKLQSSMPAA KRSFRMSSGE  240
DHPECYHNNL MESDPAQDWN EDYRPPADDD LPQNSREADE LLGESSPGFD VLVDNDADAA  300
AYLHDEEDFG RDIYPVEDYE YAPADFEIPP HHERELFNRM GEQGPVGQIY DGYERKRRRT  360
SSERNMDRPS HSERRSRHRD IGHVEIDGSD LRHRLRRRKI NGSSGPSPER SGEHRRRDER  420
YRERVYDGHR THRDRHRSPR GSTLSSRLQG RIKLPGRSPD RVVTRSEKEQ DRRPLRDRLS  480
PVKHMDIQGV RHREAGQHQE RTLRRSSELP SSARIADGQH LRRNMTDSLN FGRKANGRVE  540
SEASLDFEGP KPLSIILQRK RQATCGNGSS AHNGKQDKSA KVSHRQPEST AETEKEGYDN  600
IVSSEEYKSR SGDEYKEESR IPAEGHGQSS SHGDKPETED IIEVDPVVNQ EADNYEQGEG  660
ESDYDAAEGQ EYKSEDENAY QDDEDEFEDD DDFARKVGVV FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358RKRRR
2354359RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G253200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580797.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLI1J3830.0I1J383_BRADI; Uncharacterized protein
STRINGBRADI5G25760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]