PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G221600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 464aa    MW: 48479.8 Da    PI: 7.5204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G221600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00053473841254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +++eY+k L
  Brast09G221600.1.p 347 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYVKFL 384
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.649335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10345400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-4345388No hitNo description
Gene3DG3DSA:4.10.280.101.8E-7345393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGDHELMHAA HHPAMYSSNN NGGAGAVSNG AGMWWNNTVP AAACSTEQLA AAGFGGTWQS  60
SLAGSGYDVV AAADAGKAKA ATPASSESPG NNSSVTFQEP NGCCLNDPSA PAGFTDWNNH  120
TYMSSSSTGA AAGNLHGFLQ VGHVQDNNMS AARADHMNAS SLMSNNLDLA LQGSGSHQEQ  180
QLLSSLGQQA ELLLSPTSHY GFHSSSLLRS LMDNQPTAKS ASALGIQQQQ QYNQYAQQQQ  240
MVAGRGRGPL QFNNDAAFWN NNPSASAAAG FGGMMAAPAA DQAAMRAAVK QSSPVPPRAA  300
SLALKTVLEG VGDSSSITTS RKKASGEPAF KKPRMETPSP LPTFKVRKEK LGDRITALQQ  360
LVSPFGKTDT ASVLHETIEY VKFLHDQVGV LSAPYLKQNG NHHHHQVPQY LKSSSASPDK  420
PSKDGSEVSL KGRGLCLVPI SSTFAVASEV PVDFWTPFGA GFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G221600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580620.10.0transcription factor bHLH112
TrEMBLI1J2810.0I1J281_BRADI; Uncharacterized protein
STRINGBRADI5G22920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.37e-46bHLH family protein