PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G119300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 358aa    MW: 40046.1 Da    PI: 5.3001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G119300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM942.3e-29582021128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                         lp+G++F+P+d el+ ++L++kv + +      ++  +   +i++  +i++++P++Lp  +k + ++ yfF++ +++y  gkrk r+    
  Brast09G119300.1.p  58 LPAGVKFDPSDLELL-RHLEAKVGEANpashilID--DfipTIEKEeGICYTHPENLP-DIKIDGTNNYFFHTISNAYLVGKRKCRKisns 144
                         799************.99*****999966664422..23333555548**********.7778999********************75666 PP

                 NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkg...ektdWvmheyrl 128
                               +s  W++tg++k++l+ +g ++g kk+Lv+y g++++g   ekt+W+mh+y+l
  Brast09G119300.1.p 145 ghtapDESIKWHKTGRSKSILE-NGVVKGWKKILVLYIGSKKRGgniEKTNWTMHQYHL 202
                         6655444677************.99************66555552227*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3150221IPR003441NAC domain
PROSITE profilePS5100526.79858221IPR003441NAC domain
PfamPF023653.5E-1359202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADSESLIIT WKTITTIIRN STNMPPYEIK ELVAKAWREC PNCKCCIYND VSSLWPGLPA  60
GVKFDPSDLE LLRHLEAKVG EANPASHILI DDFIPTIEKE EGICYTHPEN LPDIKIDGTN  120
NYFFHTISNA YLVGKRKCRK ISNSGHTAPD ESIKWHKTGR SKSILENGVV KGWKKILVLY  180
IGSKKRGGNI EKTNWTMHQY HLGVEEDEKH GKHVVSKIFL QLRSNKTGKS QTDAVNEEYD  240
SFAGEIDPTT PMTNPPQPRR LDSSLFKTEQ YQEEDEEYEA ALAALLGLDE HPMSNGIPYD  300
ACPKKAPLPL DMDALHEFSD PDVGTLGQDK DKPSGLQDSF GSWLNLNESN VASEQGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G119300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.21e-173SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1IYV31e-171I1IYV3_BRADI; Uncharacterized protein
STRINGBRADI5G13450.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-67NAC family protein