PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G119200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 43027.4 Da PI: 5.1056 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96 | 5.7e-30 | 79 | 223 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ +L++kv + ++++ i+e+ +i++++P++Lp +k + ++ yfF++ +++y gkrk+r+ Brast09G119200.1.p 79 LPAGVKFDPSDLELL-THLEAKVGLGNsashilIDEFIPtIQEMeGICYTHPENLP-GIKIDGTNSYFFHTISNAYDVGKRKRRKvvnsdh 167 799************.89****988875666654443444999988**********.6777899********************7577777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 + +W++tgk++++ + +g ++g kk+Lv+y g+++kg kt+W+mh+y+l Brast09G119200.1.p 168 tvrDEPIRWHKTGKSRSISE-NGVVKGWKKILVLYIGSKKKGAdidKTNWTMHQYHL 223 65433567**********99.99************88888886666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-33 | 69 | 242 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.897 | 79 | 242 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-13 | 80 | 223 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MAESLIITWK TIATIISKST NMLPLEIEKL VAEAWRECPN CKYRIDNDSS TLIITRAPLP 60 DEASDEHSFC AVSSKWPGLP AGVKFDPSDL ELLTHLEAKV GLGNSASHIL IDEFIPTIQE 120 MEGICYTHPE NLPGIKIDGT NSYFFHTISN AYDVGKRKRR KVVNSDHTVR DEPIRWHKTG 180 KSRSISENGV VKGWKKILVL YIGSKKKGAD IDKTNWTMHQ YHLGVEEDEK HGELVVSKIF 240 WQLRSNKTRK SQMYAVDEEC DSVAGEIDPT TPMTNPPQPR RLNSSPCKTE QNEEEDEEYG 300 LLLTGTSQAI NDVATLPGLA EHPLSNGTHT CPKNAPLPLD MDALHGFSDF DKDLFNLPDN 360 PFGSQDSLSW LDLDNKHTEE KEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | KRKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G119200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581357.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | I1IYV3 | 0.0 | I1IYV3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G13450.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-68 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G119200.1.p |