PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G020400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 909aa    MW: 98511.3 Da    PI: 5.2162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G020400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07109136225
                         -S---SGGGGTS....--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartG....tCkyGdrCkFaH 25 
                         kt+lC++f+r G     C++G+ C++aH
  Brast09G020400.1.p 109 KTSLCSYFRRHGagpdGCRHGEACRYAH 136
                         9*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-10105144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.91E-5105143IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-4107138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981107139IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5109136IPR000571Zinc finger, CCCH-type
CDDcd005901.42E-5184249No hitNo description
Gene3DG3DSA:3.30.70.3302.3E-6187264IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549288.37E-6187260IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.818302908IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533359.26E-47304330IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533359.26E-47362466IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533359.26E-47537653IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.0E-63545653IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.4E-8593655IPR025714Methyltransferase domain
CDDcd024404.73E-7599653No hitNo description
Gene3DG3DSA:3.40.50.1501.0E-63793848IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533359.26E-47796908IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059586.3E-7799844IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300804836IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.0E-63883908IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MEEDKAQPPP QQQQLQEIEP ARDNHKRGED LPEPATGDEL AAASAAASAV QDKAQPPPQQ  60
QGEIELAGDK RKREEDSPGT ATGDELAAAA SAGEEAGSGG ASQLHPMSKT SLCSYFRRHG  120
AGPDGCRHGE ACRYAHTDEE LRPRPDGTWD PTSDRAKKLR KVSAEAEEAD EEVVTFDDKS  180
LDKCLVGLPR AWVTDRLKTF LQEQGISYAT AKKKKGMTVG FVTFETVEEL KNAVEVLKEN  240
QSGGKEIKIA DANRRSHQKS HTGGPVTDNG AATGNNGVAP ATADGTPTPE AEAASKKTVR  300
DAVTPLAHMT YNDQLEHKKN SVAQLLKKLT RNAKKACPAD VPNPDWVFKS KQIGGLPCKL  360
EGILESPVID GYRNKCEFSA GHSLEGKKTV GFMLGNFREG VTAVEEPVNC PNVSGIACKY  420
ASMFQDFLRL SSLPVWNRMD NSGFWRQFTV REGRSPPQAV VAQDAETQIS EVMLIVQVCS  480
TGVDEVLMKD ELEKLSTTLV RGAATCLPPL PLTTIVVQDH KGISNVAAAD CPLIPLLVPK  540
VDQSEEEAVD KTRIHDYISN LRFSISPTAF FQVNTLAAER LYTLAGDWAN LNSDTLLFDV  600
CCGTGTIGLT LAHRVGMVVG IEMNESAVLD AQRNALINGV KNCRFVCGKA EDVMGSLLTE  660
YLGSPQQDIA DSESNSEVGP TGKNEDTVTG NEENMDSLTE KNDNGESPQL KDISTDHPTS  720
VSDEAKGGSD NRGSEDLEGG HEYNEAIRKQ NFEEASLINA ESLDTKAADS LEHTKKSKDD  780
SSISKSSVLA TSASQFKNFV AIVDPPRVGL HPTVIKALRT HPRIRRLVYI SCNPESLVAN  840
AIELCTPTSE NREKNKGHRG WRTMSSAGLA RQRTKSMPNS EPFVPKRAMA VDLFPHTSHC  900
EMVMLFER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5xj2_A8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5xj2_B8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5xj2_C8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5xj2_D8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5zq8_A8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
5zq8_B8e-1829966076371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259RRSHQKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G020400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239665.10.0zinc finger CCCH domain-containing protein 24
TrEMBLA0A0Q3E1R50.0A0A0Q3E1R5_BRADI; Uncharacterized protein
STRINGBRADI5G02300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein