PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G220600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 26439.3 Da PI: 5.1994 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.9 | 5.6e-18 | 18 | 59 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +rie rqv fskRr g++KKA+ELSvLC+ e a ++fs+ Brast08G220600.1.p 18 ERIERPAARQVAFSKRRDGLFKKASELSVLCGPELAAVVFSP 59 6899999*********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.614 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.4E-25 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-22 | 11 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-13 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-21 | 19 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-13 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-13 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPLRGSRPSL GRRRIPMERI ERPAARQVAF SKRRDGLFKK ASELSVLCGP ELAAVVFSPG 60 DNKAFSFGSP SVDAVLLATL FANNNNNNAG SSSSSAPAAA LTEAGSSSSP APAAVAAELL 120 GLTKEYEELR AMLEREKLRK GRAEEEMRRQ REAAAGGCPA VAWLDAGLAG LSEADLVELK 180 AALMEVKSAI DVPLAMAPAA PVAMPMMLRG FAGSVCEAGG SSSSSGNKDG AAGPPAMEEM 240 MQQLDLDLVG QIVPA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G220600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754099.1 | 1e-54 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A0Q3KAM6 | 5e-55 | A0A0Q3KAM6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G26320.1 | 4e-41 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-17 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G220600.1.p |