PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G070700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 310aa    MW: 32673.5 Da    PI: 6.2407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G070700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000161972341254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  Brast08G070700.2.p 197 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIGYIKFL 234
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.153185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-8195243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-5195239No hitNo description
SuperFamilySSF474591.13E-10195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAEEWWSAAR TGGDDAPAAT VSTTSRTSEA SQPCFPVDAA ASSSASFVLP DPDMDWTQAF  60
MDGKVAESEH PTSFNALLGL QGDASRQFLL DQAALLQQPG VSQQYADSPE SLTPFCSQQQ  120
QQQQQLPGGF FVSSSSGLFG SSPVPPPGHI KSKPAAVQVQ DACSSSATKR AAAAGSPVAS  180
KKPRIDMPSP LPAFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIGY IKFLHDQVAS  240
LSSPYLTSCG RALQDQHQLQ GSIKVDGKAK EDLRSRGLCL VPVASTYTVA GEAASEFWHP  300
TFGVGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G070700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378342e-75CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566069.11e-160transcription factor bHLH123
TrEMBLA0A0Q3QWB21e-158A0A0Q3QWB2_BRADI; Uncharacterized protein
STRINGBRADI2G20720.11e-129(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-46bHLH family protein