PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G041700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 333aa    MW: 35193.2 Da    PI: 8.4936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G041700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08223265954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+++ +++  Lr+l+P     +s+K++ a++L +A  Y++ L
  Brast08G041700.1.p 223 ARLRREKVSERLRALRRLVPGG---GSGKMDTASMLHQAACYLRFL 265
                         599******************9...9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.643214265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.09E-9217270No hitNo description
SuperFamilySSF474594.84E-12219274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9220271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-10222274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5224265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDGFGWSTQR HPAAASCPGD DALLAAFLGG ASATSLELLH SATAGDISDA AYGHELPPSC  60
QDDDLRRLLR CRDSVSPLPF AVDDPPKSAF LHNSAGSLLR APAPPPIAAH DSFVAFFSNA  120
GDAFSGTAAG NISSGESNTC CRPGGRDAEV ASPPIPPETR TTTGTEATEQ ETIYRAAAMR  180
PVVVVEPRQT SSSSPAPAAE PHHPPRRRRR NVRISSEPQT VAARLRREKV SERLRALRRL  240
VPGGGSGKMD TASMLHQAAC YLRFLKAQLA RFQAMAADGD GRYSSSSSSS SSMQRYVGRP  300
PPWNSNPECL GDGRDGVAAG YVRPSNRNMQ SL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G041700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754355.11e-120uncharacterized protein LOC106866126
SwissprotA0A0P0WQ901e-29LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLI1HH131e-119I1HH13_BRADI; Uncharacterized protein
STRINGBRADI2G18200.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5002922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-16bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]