PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G023400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 293aa    MW: 31774.8 Da    PI: 6.4164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G023400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19117168256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+++AeIrd +    r +r++lg+f taeeAa a++aa+++++g+
  Brast08G023400.1.p 117 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATAEEAALAYDAAALRMRGP 168
                         69*******.**********433...24**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-14116175No hitNo description
SuperFamilySSF541715.69E-21117176IPR016177DNA-binding domain
PROSITE profilePS5103223.024117175IPR001471AP2/ERF domain
SMARTSM003801.1E-33117181IPR001471AP2/ERF domain
PfamPF008472.3E-15117167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-30117175IPR001471AP2/ERF domain
PRINTSPR003671.2E-10118129IPR001471AP2/ERF domain
PRINTSPR003671.2E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAIGAPGDRS SILENVWASI MTTPAPAPAP EEREKEKEKE KAAPAILRRL PSLGRWISMG  60
ADEWDELLGL DAAAHAPQAA FPSAAAAHEE DDEEEHAALL SKASSSSSPA AVVGKKSYRG  120
VRRRPWGKFA AEIRDTRRRG ARVWLGTFAT AEEAALAYDA AALRMRGPRA SLNHPLHLVQ  180
RRLLELDLGL MAAAPADQAP SLRRAGRKRR KKMINSDDAA ATAADQARIV GADDGFREIT  240
SDQYQMVSFA ASSQKDHGAA MQDQHVMSSR SVIELEEIGG EYWDYLFPPD LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25116178466ATERF1
3gcc_A2e-25116178466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G023400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314516.11e-117ethylene-responsive transcription factor 15
TrEMBLA0A0Q3G2U41e-115A0A0Q3G2U4_BRADI; Uncharacterized protein
STRINGEMT057892e-77(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-17ethylene responsive element binding factor 2