PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G023400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 31774.8 Da PI: 6.4164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 117 | 168 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + r +r++lg+f taeeAa a++aa+++++g+ Brast08G023400.1.p 117 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATAEEAALAYDAAALRMRGP 168 69*******.**********433...24**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.79E-14 | 116 | 175 | No hit | No description |
SuperFamily | SSF54171 | 5.69E-21 | 117 | 176 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.024 | 117 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-33 | 117 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-15 | 117 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-30 | 117 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAIGAPGDRS SILENVWASI MTTPAPAPAP EEREKEKEKE KAAPAILRRL PSLGRWISMG 60 ADEWDELLGL DAAAHAPQAA FPSAAAAHEE DDEEEHAALL SKASSSSSPA AVVGKKSYRG 120 VRRRPWGKFA AEIRDTRRRG ARVWLGTFAT AEEAALAYDA AALRMRGPRA SLNHPLHLVQ 180 RRLLELDLGL MAAAPADQAP SLRRAGRKRR KKMINSDDAA ATAADQARIV GADDGFREIT 240 SDQYQMVSFA ASSQKDHGAA MQDQHVMSSR SVIELEEIGG EYWDYLFPPD LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 116 | 178 | 4 | 66 | ATERF1 |
3gcc_A | 2e-25 | 116 | 178 | 4 | 66 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G023400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314516.1 | 1e-117 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A0Q3G2U4 | 1e-115 | A0A0Q3G2U4_BRADI; Uncharacterized protein | ||||
STRING | EMT05789 | 2e-77 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 5e-17 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G023400.1.p |