PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G168900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 310aa    MW: 32943.1 Da    PI: 9.2109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G168900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09140187455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Brast07G168900.1.p 140 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 187
                         8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.74E-10134191No hitNo description
SuperFamilySSF474592.49E-15134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRHRSPPPAA GGEIQALAPA SAAGSSSSTT TTTGGGGGSF TALLGLPMSQ AMELLLPPSA  60
PPPTFPSDPS LVDRAARFSA FASPSPPTPP AKRKADPADR ASKGKKGRTT AGGDEKDAVG  120
EDGKPAYVHV RARRGQATDS HSLAERARRE KINARMELLK ELVPGCSKVS GTALVLDEII  180
NHVQSLQRQV EYLSMRLAAV NPRVDFGGLD SFLTTECGRI TGLNCKSGMD LEQVTWPDMG  240
VHGARHLMQL QQQFWHGDLA HPHQPPSQWE KRGDVHPPVF SNSSSSLFGY DLTSSGQQQP  300
QTSKLKTEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G168900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953320.0FP095332.1 Phyllostachys edulis cDNA clone: bphyem123o05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227502.21e-163transcription factor bHLH48
SwissprotQ8VZ023e-61BH048_ARATH; Transcription factor bHLH48
TrEMBLI1GXA91e-162I1GXA9_BRADI; Uncharacterized protein
STRINGBRADI1G35990.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]