PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G096100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 644aa    MW: 73047.2 Da    PI: 8.1273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G096100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.3e-2098203290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdg 74 
                          Yn+YA+  GFs++ ++s++s  ++ + k++fvC+k  k+++ +++                   + +++  +  +  Ckak++vk++ dg
  Brast07G096100.1.p  98 HYNAYARVKGFSIKSNTSRRSAYTNLVEKQQFVCNKFRKPKNVDDAggqsskvprkesssdenpVDATNEDPSAIKKVCKAKMTVKLM-DG 187
                         6****************************************999999********99999988755555555666778**********.** PP

                FAR1  75 kwevtkleleHnHela 90 
                         +w+vt ++ eHnHel 
  Brast07G096100.1.p 188 RWQVTFFVAEHNHELI 203
                         **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1798203IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.05583619IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
GVGESPAXIG IADNEPLRED TYVVAPVAGR TIVVAEHSGG VAQDTGGVAE SAGGVTPNTS  60
GVACEAPANI EQELEYSSQP QEPYLGMRFD TLAGAKEHYN AYARVKGFSI KSNTSRRSAY  120
TNLVEKQQFV CNKFRKPKNV DDAGGQSSKV PRKESSSDEN PVDATNEDPS AIKKVCKAKM  180
TVKLMDGRWQ VTFFVAEHNH ELITRPSLTK YLLSHKNISP EEEEFIRLLD DCNLETATLT  240
HMPATMTHIP ATLAGAVMHL LLVFLLMMTL LSRFYANGLM VPYTTKTINN FRSKIRSERK  300
GDDMAETVSY FMAKQKEDPT FYFNVKMDED KRVELLFWVD GLARKATTCP LPPSLASTGT  360
GKASCWVVDY AMRASIAKVF PNTVHRNCRW HTMKKAQEKL GSFLGRRPGL SQDYNECIDM  420
SMTPPEFEQN SAALVAKHRL EEHADFAHLY SIRKTWVPCY FRQCFFPFLQ STQRSEGFNA  480
VLKRYVNPHN SILNFVKQYE KIQVKILVKE GGNDYRIDHL TQCTWSAYPI EKQAFAVYTR  540
DIYVKFRDEF MLTGRYNVRP QPNDLYQLVP NMTYCQFYGA RSYLVVARVQ EEEYICECGK  600
MNRDGLLCCH ILKVFTHLGI DEIPERYIMR RWMQNVIPGE AAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G096100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312602.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3GTY50.0A0A0Q3GTY5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-59FAR1-related sequence 5