PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G046000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 19052.6 Da PI: 10.4839 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.8e-17 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g Brast07G046000.1.p 47 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 96 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 46 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-37 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 47 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-10 | 47 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-25 | 47 | 106 | No hit | No description |
PROSITE profile | PS51032 | 22.972 | 47 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 86 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
METEAAAAFY QPPPAVPAPM PLPLPAKAPS GPGGAAARGG GAAAARQYRG VRMRKWGKWV 60 AEIREPNKRS RIWLGSYSTA VAAARAYDTA VFYLRGRSAR LNFPDQLDGA TAALKLEDGG 120 LTAAAIRKKA AEVGARVDAL HSGIGCGAPP PPPPSPSPSQ RRRTKYPDLN REPTPDTDDG 180 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 38 | 108 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G046000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361937 | 1e-118 | AK361937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001G06. | |||
GenBank | KM263198 | 1e-118 | KM263198.1 Triticum aestivum cultivar RAC875 drought responsive element binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227995.1 | 1e-83 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | O22174 | 1e-41 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | I1H0P6 | 3e-82 | I1H0P6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48320.1 | 5e-83 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 6e-33 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G046000.1.p |
Publications ? help Back to Top | |||
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