PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G219400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 592aa MW: 62265.6 Da PI: 7.905 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 270 | 329 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a+++a++k++g Brast06G219400.1.p 270 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDQAALKYWG 329 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 51.4 | 2.8e-16 | 374 | 423 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+fgt eeAa+a++ a+ k++g Brast06G219400.1.p 374 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 423 9***************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.2E-13 | 270 | 329 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.56E-20 | 270 | 337 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-16 | 270 | 338 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-29 | 271 | 343 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 271 | 338 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 271 | 337 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 272 | 283 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-23 | 372 | 433 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 372 | 432 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-32 | 373 | 437 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 373 | 431 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.085 | 373 | 431 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 374 | 423 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 413 | 433 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MTNDSNNGAG WLGFSLSAPH MVDAHNHHNH VQQQSQNDGG SGGGLFYPSP AAAAAAAAYG 60 LSAGDAVNTS LGYYYSPQLA SMPLKSDGSL CIMEALRRAS DAHHGGPKLE DFLGAGGVHQ 120 QQQHALSLDN DSSAFYYYGG AGNGNGGQQS FLQQQQGYEV YGGGPAMAEE EDSAAAAAMA 180 SWVQQASSQL QLQQHPLALS MSSGAASLSS CVTLSEQHYG SGGGAVVGAG AGGEGGGGHG 240 GRKRAGNSNN SKQQAVQHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR 300 KGRQVYLGGY DMEEKAARAY DQAALKYWGP STHINFPLEE YAGEVEEMKK MSRQEYVAHL 360 RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFGTQEEA AEAYDVAAIK 420 FRGLNAVTNF DITRYHVDKI IASNTLLPAE LAKRNPNPSP NPTLLLQDAT AAIVPAPPPP 480 PPPHEGHAAA FSAAVQGNNG NVRMAAAMSA AAAASSGLSS SSRGEADEIS TDADYRAAGG 540 LSSVLFAAKQ QHPNPPKLLS ASSWASSPAP ARPAAAVSIA HMPMFAAWGD A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G219400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088263 | 1e-139 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757387.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-142 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2K2DS34 | 0.0 | A0A2K2DS34_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G57560.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-124 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast06G219400.1.p |