PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G300700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 349aa    MW: 38730 Da    PI: 8.4627
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G300700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32119175360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  Brast05G300700.1.p 119 DGYNWRKYGQKQVKGSEFPRSYYKCTYPTCPVKRKVETTL-DGQIAEIVYNGEHNHPK 175
                         9***************************************.***************85 PP
2WRKY89.72.5e-28288342258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dD ++WrKYGqK v+g+ fprsYYrC++a+C+++k vers+ d + +++tYeg+Hnh
  Brast05G300700.1.p 288 DDAFRWRKYGQKAVNGNSFPRSYYRCSTARCNARKFVERSS-D-NSLVTTYEGRHNH 342
                         8****************************************.4.567799******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.101112176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-27113176IPR003657WRKY domain
SuperFamilySSF1182901.7E-24115176IPR003657WRKY domain
SMARTSM007742.3E-34117175IPR003657WRKY domain
PfamPF031062.0E-24119174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-26276342IPR003657WRKY domain
PROSITE profilePS5081124.719282345IPR003657WRKY domain
SuperFamilySSF1182901.7E-22283342IPR003657WRKY domain
SMARTSM007741.1E-29287344IPR003657WRKY domain
PfamPF031064.8E-23288342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQSQEKITAV KPVASRPFSS FSSFSKLLKD FTTTGSTQIT SPGETVIVSR PKASRFAPPP  60
SDPSTIIAAT MLQDGGSDTT QEQMVVDTEQ EAVSCDEHQT VFQNINKPIQ GAKNRLSYDG  120
YNWRKYGQKQ VKGSEFPRSY YKCTYPTCPV KRKVETTLDG QIAEIVYNGE HNHPKPHLPK  180
KPALSSTSTE VIIAADVYGS NDAGAESQLG ASEHNHPRPI LSSTVRRMLE HRASLSFRSS  240
RDCLDEHGHN SLVCDCKSSR KEEQSNGLEA YVEAARVFQP AAECESSDDA FRWRKYGQKA  300
VNGNSFPRSY YRCSTARCNA RKFVERSSDN SLVTTYEGRH NHIAERIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20119342877Probable WRKY transcription factor 4
2lex_A2e-20119342877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G300700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428557e-66AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149677e-66AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149687e-66AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418607e-66AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004967e-66BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005037e-66BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0725487e-66BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126207e-66CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229417.20.0WRKY transcription factor 44 isoform X1
RefseqXP_024312255.10.0WRKY transcription factor 44 isoform X1
RefseqXP_024312256.10.0WRKY transcription factor 44 isoform X2
TrEMBLI1GL340.0I1GL34_BRADI; Uncharacterized protein
STRINGBRADI1G02327.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.29e-52WRKY family protein