PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast05G263500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 450aa MW: 48687.4 Da PI: 4.3968 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83 | 2.5e-26 | 134 | 199 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kfl+ll+ ++ g+v+ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg Brast05G263500.1.p 134 RYDSSLGLLTKKFLNLLKGAPGGMVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 199 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-28 | 132 | 200 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-16 | 134 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.0E-34 | 134 | 199 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-23 | 136 | 199 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.31E-50 | 210 | 316 | No hit | No description |
SuperFamily | SSF144074 | 1.67E-33 | 212 | 316 | No hit | No description |
Pfam | PF16421 | 3.2E-34 | 215 | 314 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence Send to blast |
MAATAGAGTS SEGAARVLLQ RYQPFGSPPG EYHHFGPADG SGAGAAEMAE AIVLRTPLKR 60 KHNREDNGLA ESNDWMMSPG YANAASSPVP TPPSGKGSKH PTKLKAAKGQ KSSSQAPLFS 120 GSPGNPATPV GGCRYDSSLG LLTKKFLNLL KGAPGGMVDL NNAAETLEVQ KRRIYDITNV 180 LEGIGLIEKK LKNNIRWKGI DDSRPGEVSD DVSILQGDIE ALTLQEHSLD EQISDMRDKL 240 RELTEDENNQ KWLYVTEEDI KSLSCFQNQT LIAIKAPHGT TLEVPDPDEV NDYPQRRYRI 300 VLRSTMGPID VYLVSQFEEM SGMDTPPRPA QTISTDTLEN PRTPLATGSN KDTEMELNIQ 360 DGPIIPPDAP TSSQDIGGMM KIVPSDLDTD ADYWLLSDTG VSITDMWKTA PEVEWDGMDI 420 NADDLLEVST PRQQGQLPSD IADLPSCIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-22 | 126 | 200 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00661 | PBM | Transfer from Pp3c1_6880 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast05G263500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578886.1 | 0.0 | transcription factor E2FA isoform X1 | ||||
Swissprot | Q9FNY0 | 1e-123 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | I1IU74 | 0.0 | I1IU74_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G42050.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-112 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast05G263500.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|