PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G188400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 861aa    MW: 91520.1 Da    PI: 5.8542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G188400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-21126181156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  Brast05G188400.1.p 126 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 181
                         688999***********************************************999 PP
2START168.16.1e-533375634205
                         HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
               START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                         ++a++elvk  ++++p+W  s     e +n+de+++ f++  +     + +ea r++g+ +  +a+lv +l+d + +W e+++    +a+t
  Brast05G188400.1.p 337 LAAMDELVKVTQVDDPLWLPSLdsgfETLNYDEYRRAFARVVGhspagFVSEATREVGIAIVSSADLVDSLMDAA-RWAEMFPcvvaRAST 426
                         789*****************9999**************8865599******************************.*************** PP

                         EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECT CS
               START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksn 159
                         +e is g      g +qlm aelq+lsplvp R+++f+R+++q+ +g w++vdvS d    p         ++++ ++llpSg+++e++ n
  Brast05G188400.1.p 427 TEIISGGmpgtrsGSIQLMHAELQVLSPLVPiREVTFLRFCKQHAEGLWAVVDVSADGVLRPDGgaangaAAGYMGCRLLPSGCVVEDMRN 517
                         *********************************************************998887777778899******************* PP

                         CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         g+skvtwv h+++++  +h l+r+l++sg+a ga++w+a lqrqc+
  Brast05G188400.1.p 518 GYSKVTWVVHAEYDETAVHHLYRPLLRSGQALGARRWLASLQRQCQ 563
                         *********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-22109183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-23113183IPR009057Homeodomain-like
PROSITE profilePS5007118.301123183IPR001356Homeobox domain
SMARTSM003891.5E-19124187IPR001356Homeobox domain
PfamPF000466.4E-19126181IPR001356Homeobox domain
CDDcd000861.02E-19126183No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084839.771325567IPR002913START domain
CDDcd088752.03E-107331563No hitNo description
SuperFamilySSF559612.59E-27332563No hitNo description
SMARTSM002341.7E-36334564IPR002913START domain
PfamPF018522.3E-44337563IPR002913START domain
SuperFamilySSF559613.3E-13638780No hitNo description
SuperFamilySSF559613.3E-13813853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MSFGGMFDGA GSGVFSYDAG GGAGMHNNPR LLPSPPLPRP GGGGVFGSST GLSLGLQTNM  60
SMEGGGPLAG DANRLGLMGS SGSGGDGDSL GRGREDENDS RSGSDNLDGA SGDELDPENS  120
NPRKKKKRYH RHTPQQIQEL EAVFKECPHP DEKQRMELSR RLNLESRQVK FWFQNRRTQM  180
KTQIERHENA LLRQENDKLR AENMTIREAM RSPICGNCGG AAVLGEVSLE EQHLRIENSR  240
LKDELDRVCS LAGKFLGRPI STITSGLEFG IGAPNGFGAL GPLAGGSSSV LQPIPDLMGG  300
SSAAAMRLPA GISGLDDAEI SGGAIAVDRG VLLELGLAAM DELVKVTQVD DPLWLPSLDS  360
GFETLNYDEY RRAFARVVGH SPAGFVSEAT REVGIAIVSS ADLVDSLMDA ARWAEMFPCV  420
VARASTTEII SGGMPGTRSG SIQLMHAELQ VLSPLVPIRE VTFLRFCKQH AEGLWAVVDV  480
SADGVLRPDG GAANGAAAGY MGCRLLPSGC VVEDMRNGYS KVTWVVHAEY DETAVHHLYR  540
PLLRSGQALG ARRWLASLQR QCQYLAILCN NSLPSHDNQA ISPVGRRSML KLAQRMADNF  600
CAGVCATAAQ KWRRLDEWRV EGAMPGGGDQ RQGGGGGDKE VRMMARQSVG APGEPPGVVL  660
SATTSVRLPG TPPQRVFDYL RDEQRRGEWD ILANGEAMQE MDHIAKGQLL GNAVSLLRPN  720
ATSGNQNNML ILQETCTDSS GSLVVYAPVD VQSMHIVMNG GDSAYVSLLP SGFAILPDGH  780
NTPPAVADPA ALSSQQHQQG SSESAAHGNN NNTGSLVTVA FQILVNNLPT AKLTVESVDT  840
VSNLLSCTIQ KIKSALQASN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G188400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657940.0AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578475.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLI1IS180.0I1IS18_BRADI; Uncharacterized protein
STRINGBRADI4G35760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein