PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G081700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 328aa MW: 35188.4 Da PI: 8.64 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 70 | 146 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe+hsk+pvv+v+g+e+rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ Brast05G081700.1.p 70 CSVDGCRSDLSRCREYHRRHKVCEAHSKTPVVVVAGQEKRFCQQCSRFHMLAEFDEGKRSCRKRLHGHNRRRRKPQH 146 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-33 | 65 | 131 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.881 | 67 | 144 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 69 | 149 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-30 | 70 | 143 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDWAAAPEAV SWGVAAEAVA DPGPTMLSFA SPSFSSSAAV VEQLQDRSRP ASVTARRSRA 60 PGSAAGTVGC SVDGCRSDLS RCREYHRRHK VCEAHSKTPV VVVAGQEKRF CQQCSRFHML 120 AEFDEGKRSC RKRLHGHNRR RRKPQHDAMN PRSFFPYHQV NKFSVYPRTF PIADPNAGAS 180 MHPLEHHRPF SISFSGTIKA PKHFPFLQDG SSIYSTDSPT LPQPFSSREG CNNNRSSTCN 240 GLSSALDPEC ALSLLSSSLH LSPISIPSAT VPAQFASSLA RTAVDSQTAT IAFASGGDGG 300 GGGGGHVLVP DAMFEDPSQG MPFCWQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 64 | 143 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 143 | KRSCRKRLHGHNRRRRKP |
2 | 130 | 141 | RKRLHGHNRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G081700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577554.2 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 1e-116 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A0Q3ELQ9 | 0.0 | A0A0Q3ELQ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G18900.1 | 1e-122 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-31 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G081700.1.p |