PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G176600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 304aa MW: 32067.2 Da PI: 8.9282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G176600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	84	133	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h Er RR+r+ + f++L llP++ p K++K++i+ +A+++Ik L+ Brast04G176600.1.p 84 RAQHITTERERRRRMSEMFSTLHGLLPSL---P-DKMDKSSIVMEAIHHIKTLE 133 899***********************6...3.9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-16	79	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.234	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-10	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-14	84	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-7	88	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-6	97	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSQEHNSTDD KKNKAPAADS SDDNSMSSGS DLIGAGTVDK GKGFVKEEEQ AEEGTGGSKG 60 NKLMSAAQAA AGRTGGSRRR RGSRAQHITT ERERRRRMSE MFSTLHGLLP SLPDKMDKSS 120 IVMEAIHHIK TLEGTLRELE KRKEDLARGM PGSSVSGISS SSSAAVVPVP AAVVVQPPPP 180 AGGILPAGVV AVPQVQLQTW SGQNVVLSFS GDNAYINVCA PRYCPRMLKL VVAVLDKHGL 240 EVITSGIASD SSRVKFTFHT RVNAANSVFG DNVSSEDLCK LAVSEIMLWL SSAKYCVQGT 300 SAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	96	RRRGSRAQHITTERERRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G176600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572599.1	4e-95	transcription factor bHLH95
Refseq	XP_010235515.1	4e-95	transcription factor bHLH95
Refseq	XP_010235516.1	4e-95	transcription factor bHLH95
Refseq	XP_010235517.1	4e-95	transcription factor bHLH95
TrEMBL	A0A0Q3FKM5	1e-125	A0A0Q3FKM5_BRADI; Uncharacterized protein
STRING	BRADI3G45360.1	2e-81	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast04G176600.1.p