PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G151000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 385aa MW: 42740.6 Da PI: 4.9361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 6e-31 | 56 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+P+d el+ e+L++kv + + + +e+i++++ i++++P++Lp +k++ ++ +fF++ +++y gkrk+r Brast04G151000.1.p 56 LPAGVKFDPSDLELL-EHLEQKVGQGDskphmfI--DEFIPTLEndegICYSHPENLP-GTKKDGSSAHFFHRVSNAYGCGKRKRRRisns 142 799************.99*****99986766432..333433322234**********.556778899******************75777 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tgk+k++++ +g +g kk+Lv+yk + +k+ ktdWvmh+y+l Brast04G151000.1.p 143 vhttsYDHVRWHKTGKSKPIYD-NGVMKGWKKILVLYKSsqTGSKPDKTDWVMHQYHL 199 7765444888************.999***********6422556777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-35 | 41 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.895 | 56 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-14 | 57 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MARSWLITCR GVAKKIRNVN CSSSQISEAG AEACRECPNC KHLIDNSDVA IQWPGLPAGV 60 KFDPSDLELL EHLEQKVGQG DSKPHMFIDE FIPTLENDEG ICYSHPENLP GTKKDGSSAH 120 FFHRVSNAYG CGKRKRRRIS NSVHTTSYDH VRWHKTGKSK PIYDNGVMKG WKKILVLYKS 180 SQTGSKPDKT DWVMHQYHLG VEENETVGEY VISKILYQLK AKYMEKSETE IANEESDAFT 240 ARNGPKTPKA NTPKPCRTNN SPGETEQNDL ILPDEDGEAE IPDVRLFDGA ENPAWCDIGS 300 LGVEVASQAQ PTLEESLHCH EVFDSILSQD RNETLGNNLS AFDGLPDNFD LGTLPDFLIS 360 GQDVQFCSFG SFGSWLDSTD PLET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 137 | KRKRRR |
2 | 133 | 137 | RKRRR |
3 | 134 | 138 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G151000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572678.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 4e-81 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | I1IB62 | 0.0 | I1IB62_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G47627.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-84 | NAC domain containing protein 85 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G151000.1.p |