PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G114500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 630aa    MW: 66368.5 Da    PI: 6.2818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G114500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05117134219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F+++ +L  H
  Brast04G114500.1.p 117 VCENCGKEFTSWKSLLDH 134
                         6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-53961No hitNo description
SMARTSM003555.23961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7043961IPR007087Zinc finger, C2H2
PfamPF139121.2E-43961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-5111136No hitNo description
SMARTSM00355180116136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39116143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-7297320No hitNo description
SMARTSM003550.13298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221298325IPR007087Zinc finger, C2H2
PfamPF139124.5E-9298322IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-7431458No hitNo description
PfamPF139122.0E-12435459IPR007087Zinc finger, C2H2
SMARTSM003550.46436458IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349436458IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MAMVMENQQP VAPQMRMIPA PPPRPPPPPP PVPPQAFKHH CKVCKKGFMC GRALGGHMRA  60
HGLADVDGLS VEEDLLDDDD SAPYGESSDQ AGSPSTTTTK RMYGLRANPG RLRNCRVCEN  120
CGKEFTSWKS LLDHGRCSFG EDDEDLDGEG SLRSSSPRNG MEDEEEEEEE GDMALASGWS  180
KGKRSRRAKV MLLGSGTTTE LQQLPPASSE EEDLANCLVM LSSSRVTQPA DVIVDVDQAE  240
SCASASKDEE MIRNRLLLPQ PISIMAPIAA SATQMMKFPV PQQVVVAQHV PAVPRGLFEC  300
KACKKVFTSH QALGGHRASH KKVKGCFAAK LESSRNETTA AANHHHPSVA TAAHYDNNTK  360
ASVSEVVDTS NTDLKAYASA DANADGGKAS TCAGGEIVIV ATTAAPETGI APAADVAPAA  420
APSSALAPFK KKGKVHECSI CHRVFTSGQA LGGHKRCHWL TSSATDPGAK LQSTVVPDHL  480
MAAMCHHLTL GRPMFDVAAD QRILDLNNVP TNPSTALVDQ AAAAIAARQA AELNDIPLCL  540
NAPASMYVQS WTGHSNASHV NKTGTSSRND AAGGGGAATE DEADSTSAKR AKIGDLKDMK  600
VAGESLPWLQ VGIGISSSES KDKAGQDQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G114500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572779.10.0uncharacterized protein LOC100837092
TrEMBLI1ICA40.0I1ICA4_BRADI; Uncharacterized protein
STRINGBRADI3G50780.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-12C2H2-like zinc finger protein