PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G114400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 314aa MW: 32490.2 Da PI: 7.4776 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Brast04G114400.1.p 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.681 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0078 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.24E-7 | 5 | 26 | No hit | No description |
Pfam | PF13912 | 1.2E-4 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.24E-7 | 165 | 192 | No hit | No description |
PROSITE profile | PS50157 | 9.078 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-9 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.954 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.4E-10 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MTKNTCKLCS RRFASPRALA GHMRSHSVAA AAAAKQQQIS SASSASTSIA AAANDEAAGF 60 KKPLPIYALR ENPKRSLRVS DAGFSDHESE AESTAPRGKR AHAAAAEPLS SVSDAATPEE 120 DVALSLMMLS RDSWPSSSAG DYWDDDGRDG GGHTLPAPDP APAVEKRTRF QCGACKKVFR 180 SYQALGGHRA SHVRGGRGGC CAPPVASPPP PQPPLMERDG DEAMEDGKGQ PRECPYCYRA 240 FASGKALGGH KRSHVCSAAA AAAAAAAAQA EEAAAPPDPI KAFGMIDLNV ALPVEEVELS 300 AVSDPRFSSN PSS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G114400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570033.1 | 1e-151 | zinc finger protein ZAT1 | ||||
TrEMBL | I1ICA5 | 1e-150 | I1ICA5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50790.1 | 1e-151 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-25 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G114400.1.p |