PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G048900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 408aa MW: 44385.1 Da PI: 8.6219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.1 | 1.2e-16 | 158 | 207 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++++ LrellP++ ++K +Ka+ L +++eYI+ Lq Brast04G048900.1.p 158 RSKHSATEQRRRTKINDRLDILRELLPNC----DQKRDKASFLLEVIEYIRLLQ 207 889*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.65E-14 | 154 | 211 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-18 | 154 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-20 | 155 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.123 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-14 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-10 | 162 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MELFQGEEPA HDFLSLRAGG SSPFQHRLQS AQRAGYGLGP HSLVKPAEPV KQPSSHGGAA 60 GDGAVSAAAD LGEQVLPGGV GTFSIRQVPD AQPREEAGMG RDASVHHGSS MEIAHEARSG 120 PMVRSAPSTM WQDSGVDKRS RAARSSGSSA DQEPSSPRSK HSATEQRRRT KINDRLDILR 180 ELLPNCDQKR DKASFLLEVI EYIRLLQEKC QKYESAIPEK NHTDSKSMAW DKVYCRSRWR 240 NTQNISQGQG GGLSATTEEM NKEQHNSPKG ITAAPASLFS TQSVKETSTT ASSSHNITEN 300 STPNNQLSWL SMSTMNKNSD VSNSKLSKQE TPSLHNDTES LSSAYSQGLL HKLKEALQKS 360 GVDPSQANIS VEINMDKRAR ANAHIHDNTK ANEGKEPMHI TKRLRCD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G048900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236005.2 | 0.0 | transcription factor BIM2 isoform X3 | ||||
TrEMBL | A0A0Q3QIL1 | 0.0 | A0A0Q3QIL1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56340.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.3 | 3e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G048900.1.p |