PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G034900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 698aa    MW: 75798 Da    PI: 6.6564
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-202176156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ +++t+ q+++Le+ F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Brast04G034900.1.p 21 KKRYHRHTPRQIQQLEATFKECPHPDENQRMHLSRELGLEPRQIKFWFQNRRTQMK 76
                        678899***********************************************998 PP
2START142.34.9e-452244433205
                         HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
               START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                         a +a++el+++a+a+e +W k         + + +d+v  k+ ++   ++e +r+s +v m+++ lv  ++d++ +W   ++    ka t+
  Brast04G034900.1.p 224 ATRAMDELIRLAQAGEHVWAKADggcrevlSVDAYDTVFGKPGPD--ARVEGSRDSCLVLMAAHALVDVFMDSS-KWADFFPtivtKARTV 311
                         6789*****************9999999999999*******9885..58*************************.***99999999***** PP

                         EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
               START  83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                         +v+ sg     + l+lm+ el +++p+vp R+  f+Ry+rq ++g w+++dvSvd  ++    ++ +Ra++lpSg+li ++sng+skvtwv
  Brast04G034900.1.p 312 DVLVSGmagrsESLVLMQEELHVMTPVVPtRELCFLRYCRQIEQGLWAVADVSVDASRYY--GAPQARARRLPSGCLIADMSNGYSKVTWV 400
                         ***********************************************************7..589************************** PP

                         E-EE--SSX....X.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 168 ehvdlkgrl....p.hwllrslvksglaegaktwvatlqrqce 205
                         eh++  ++     p + l+r lv sg+a+ga +w+a+lqr c 
  Brast04G034900.1.p 401 EHMETTESGdktnPiSPLYRDLVLSGAAFGAHRWLAALQRACD 443
                         ****977652222369************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-201378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-211783IPR009057Homeodomain-like
PROSITE profilePS5007117.8641878IPR001356Homeobox domain
SMARTSM003892.7E-191982IPR001356Homeobox domain
CDDcd000861.64E-192079No hitNo description
PfamPF000468.8E-182176IPR001356Homeobox domain
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084842.564213447IPR002913START domain
SuperFamilySSF559611.69E-28214445No hitNo description
CDDcd088751.55E-98217442No hitNo description
SMARTSM002342.5E-30222444IPR002913START domain
PfamPF018523.7E-38224443IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-4334404IPR023393START-like domain
SuperFamilySSF559611.78E-17465687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MEYGDDLAVA AGSDAAAQRR KKRYHRHTPR QIQQLEATFK ECPHPDENQR MHLSRELGLE  60
PRQIKFWFQN RRTQMKAQHE RADNCFLRAE NDKIRCENIA MREALKNVIC PTCGGPHTAD  120
DYFDEHKLRM ENAHLKEELD RVSSLTSKYL GRPITQLPSS MHHQQSLSMS SLDLSMGAAA  180
AMGPSLDLDL LSGGGSSSSG MPAAFQLPAA PVPDMERPLM ADMATRAMDE LIRLAQAGEH  240
VWAKADGGCR EVLSVDAYDT VFGKPGPDAR VEGSRDSCLV LMAAHALVDV FMDSSKWADF  300
FPTIVTKART VDVLVSGMAG RSESLVLMQE ELHVMTPVVP TRELCFLRYC RQIEQGLWAV  360
ADVSVDASRY YGAPQARARR LPSGCLIADM SNGYSKVTWV EHMETTESGD KTNPISPLYR  420
DLVLSGAAFG AHRWLAALQR ACDRHACLVA ASMPHRDIAA GVTAEGKRSM MRLSERMVSS  480
FCGSLSASQA HRWTTLSGGG GDEVGVRVMV HRSTDPGQPN GVVLSAATSI WLPVPRDRVY  540
AFVRDENTRS QWDVLSHGNP VQEVSRIPNG SHPAASSISL LRGLNASQNS MLILQESSTD  600
ATGSQVVYAP IDLPAANVVM SGEDPSAIPL LPSGFAILPD GRPGSPSGSL VTVAFQILVS  660
SLPSSRLNEE SVATVNSLIG TTVEQIKAAL NCSTTTH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G034900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570542.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLI1IEQ30.0I1IEQ3_BRADI; Uncharacterized protein
STRINGBRADI3G57567.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12