PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G295300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 347aa MW: 37500 Da PI: 7.3204 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.8 | 7.2e-11 | 151 | 209 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r NR +A rs +RK +i eLe+kv++L ae ++L +l l a l +e+ Brast03G295300.1.p 151 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTEN 209 899******************************************99998888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.8E-15 | 147 | 211 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.519 | 149 | 212 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-11 | 151 | 202 | No hit | No description |
Pfam | PF00170 | 1.1E-9 | 151 | 209 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.2E-8 | 151 | 206 | No hit | No description |
CDD | cd14703 | 3.42E-20 | 152 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MESKSAVPDG GGGGGNGLPP KPSRRDGAAA PESDMSYMPE SPRRGAGHRR AHSETIGGLP 60 DDLDLGVPGG GGGGENEEEL FFMFLDAEKL NDASEESSSC ARPRHHQHSH SMDASSSFDA 120 EQLLGAAAAA AEAKKAMSNA KLAELALVDP KKAKRIWANR QSAARSKERK MRYISELERK 180 VQTLHAEATT LSTQLALLHR DTAGLSTENS ELKMRLQNVE QQVHLQDALN DALKSELQRL 240 RMATGQMGSN VGGMMNFMGP PPPQPFGGNQ PMFHIQSQTA MQPLHHMQIH PHQQQQQQPL 300 LHPLQLQAQQ LLLGQQHAAA PPNPKMKRTI SAPNQWVGGW SESSSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G295300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181798.1 | 1e-152 | transcription factor RF2a-like | ||||
Refseq | XP_020181799.1 | 1e-152 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 2e-99 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | I1I947 | 1e-169 | I1I947_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G41817.1 | 1e-170 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 2e-68 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G295300.1.p |
Publications ? help Back to Top | |||
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