PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G201800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Trihelix | ||||||||
Protein Properties | Length: 326aa MW: 34257.7 Da PI: 10.2483 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.4 | 1.7e-22 | 61 | 150 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt++e+laLiea+r+++e+lr+g+l++++W+ev+ ++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l Brast03G201800.1.p 61 CWTHEETLALIEAYRDKWEALRKGNLRAADWDEVAGAVtarcgrFPTATYKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLL 149 8*************************************9988877778899************************98443..47****988 PP trihelix 86 e 86 + Brast03G201800.1.p 150 H 150 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.4E-22 | 60 | 151 | No hit | No description |
SMART | SM00595 | 4.0E-4 | 69 | 153 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSSSSSPKPD AVSSPELPPL AAPNIAAAAA AAAAAASSSG GMGLSGSAAG VGSGRRLPPP 60 CWTHEETLAL IEAYRDKWEA LRKGNLRAAD WDEVAGAVTA RCGRFPTATY KSGVQCRHKI 120 EKLRKRYRAE RSRSAGRSKG PKWPFFPLLH DLAGGGAPDP SPNPIIKIKP RAGAGGGTPA 180 SPSSPMSSPS SEDAGRSRSL HGLISNGGGG SGLRFTIPKG SRTKPVGVPR DARADRGDED 240 PEAEAMAEVA SALRAVGEGF LRMEERRLEL SLQMEKERMD SEMKRTQTLL DAQQLFVDAF 300 LGKQQPHHKK SKLAAFATAA AMEED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G201800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574347.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | I1I686 | 0.0 | I1I686_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33630.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 9e-28 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G201800.1.p |