PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G197500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 29227.4 Da PI: 4.4266 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.7 | 1.9e-22 | 9 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkd 89 l pGf+F+P dee+v ++L +++ g+kl+le ++ e d +++ Pw+L + +++++e +fF+ + + +++r++r+ + g W+ +g++ Brast03G197500.1.p 9 LSPGFKFNPDDEEIVEYFLLRRLLGQKLPLEGMFLEDDPLRAPPWKLL-RDHGRTDEAFFFAAGHAINGgSSRRQKRTCEcGGCWEGQGQK 98 579***************************99999************7.44456679999999888776246677785445999**99997 PP NAM 90 kevlskkgel.............vglkktLvfykgrapkgektdWvmheyrl 128 + +++l + k +L f+ +++++g +t Wvmhey + Brast03G197500.1.p 99 GRKDGDTNNLrfvdpesggameiEWKKYVLNFH-NDDEEG-STGWVMHEYVV 148 665554222245555555666646777789999.455554.9********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-25 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.99 | 9 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-17 | 11 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEAADVLGLS PGFKFNPDDE EIVEYFLLRR LLGQKLPLEG MFLEDDPLRA PPWKLLRDHG 60 RTDEAFFFAA GHAINGGSSR RQKRTCECGG CWEGQGQKGR KDGDTNNLRF VDPESGGAME 120 IEWKKYVLNF HNDDEEGSTG WVMHEYVVTA PAGLVSPTSI RAYRIRLSEH GKKRKREAED 180 PCGGDEEAAR AAARQARAEE PDLAVQEHIS GASQFGFPDQ DCEVVTDGDD QPLQVDSFEF 240 EGLYVPDNSS WFEPMPDLMK L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G197500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317200.1 | 1e-136 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2K2D0W2 | 1e-109 | A0A2K2D0W2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33680.1 | 1e-135 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-07 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G197500.1.p |