PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G116700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 542aa    MW: 60130.7 Da    PI: 6.0021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G116700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.91.6e-1301725402373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +e++++c +avs++d  +++ l+++l +l+s +gdpmqRl ay++e+L arl++s+s++yk+l++++ +    se +++++l++e++P++k
  Brast03G116700.1.p 172 KEVIIACGKAVSENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSSSGSKIYKSLRCKQPT---GSELMSYMSLLYEICPFYK 259
                         6889****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f+++ aN aI ea++ge+ vHiiDf+i qG QW++ +qaLa+Rp+gpp lRiTg+++++s+  +   l  +g rL k+ +++g+pfefn+ 
  Brast03G116700.1.p 260 FGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWVTVIQALAARPGGPPCLRITGIDDSDSTyaRGGGLDIVGTRLYKVSRACGLPFEFNA- 349
                         *********************************************************998899999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +  + ++++le+L ++pgE+++Vn+++qlh+++desvs+e++rd++L+++kslsP+vv++veqe+++n+++F+ r le+l+yy+a+f+s++
  Brast03G116700.1.p 350 IPAASHEVHLEHLGLRPGEVIVVNFAYQLHHTPDESVSTENHRDRILRMIKSLSPRVVTLVEQESNTNTAPFFPRYLETLDYYTAMFESID 440
                         69999************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a lpr+++ r++ E+++++r+ivn++acega+r+erhe ++kW++r+ +aGF+++pls+ +++++k+ll  ++ + yr+ee++g l+lgWk
  Brast03G116700.1.p 441 AALPRNDKRRMSAEQHCVARDIVNLIACEGADRIERHEVFGKWKARFAMAGFRQYPLSSVVNNTIKTLLDSYN-NYYRLEERDGVLYLGWK 530
                         *************************************************************************.55*************** PP

                GRAS 364 drpLvsvSaW 373
                         +r Lv+ SaW
  Brast03G116700.1.p 531 NRVLVVSSAW 540
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.88145522IPR005202Transcription factor GRAS
PfamPF035145.6E-128172540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSAKASDRTY RRSDDPRMAY YNNSVPSGEN GRFYVAQSHM DLHYTSSDDG SQKIRSNPQV  60
FEPQYYTLES LSGNGVYPTQ SSTSSHSISP ISGSPLSQHD SHSDHIYGSP PSASCVTEVA  120
DLQVKLKELE DAILGPELDI TSDSPESSLQ AINSLKPDNW RQLLGINTGD LKEVIIACGK  180
AVSENDVFAT ELLISELGQL VSVSGDPMQR LGAYMLEGLV ARLSSSGSKI YKSLRCKQPT  240
GSELMSYMSL LYEICPFYKF GYMSANGAIA EAIKGENFVH IIDFQIAQGS QWVTVIQALA  300
ARPGGPPCLR ITGIDDSDST YARGGGLDIV GTRLYKVSRA CGLPFEFNAI PAASHEVHLE  360
HLGLRPGEVI VVNFAYQLHH TPDESVSTEN HRDRILRMIK SLSPRVVTLV EQESNTNTAP  420
FFPRYLETLD YYTAMFESID AALPRNDKRR MSAEQHCVAR DIVNLIACEG ADRIERHEVF  480
GKWKARFAMA GFRQYPLSSV VNNTIKTLLD SYNNYYRLEE RDGVLYLGWK NRVLVVSSAW  540
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-551755408374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G116700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573869.10.0scarecrow-like protein 21
RefseqXP_010234693.10.0scarecrow-like protein 21
RefseqXP_014756863.10.0scarecrow-like protein 21
RefseqXP_024317186.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLI1I3Q20.0I1I3Q2_BRADI; Uncharacterized protein
STRINGBRADI3G24210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]