PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G083900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 459aa    MW: 50115 Da    PI: 8.0157
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G083900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.11.4e-09194279697
              DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                          w+  Dei +L ++i + +++g++p +   +++  v + ++  + sk ++ eK+r+L+ +++k v++   g  +   k++d + f+ls+  
  Brast03G083900.1.p 194 RWTLADEIKILEAFIRYVKTNGTQPGA--LDLIAAVGDTLDrKNCSKVEMYEKVRNLRLRYEKAVST---G--TLPVKDDDLQKFKLSEVA 277
                         4*********************88765..45666677777614689*******************99...4..445678888999999999 PP

              DUF573  96 Wg 97 
                         Wg
  Brast03G083900.1.p 278 WG 279
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-12194279IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MARKRRPPSP PPPPPPPQEE SSSEEASSGE EEEAEHTPTR ATQKPHQSPK SPPTATAGDA  60
IAEGSDEESS DSDIDAEAFQ LRQVVPSPSK PPAAASKLES DADEEDEEQG GSSDNPEPLQ  120
KKKAKKPKEQ SARKRQATES TPSGKSKKAK AEVEKAVPEP APTPKAKKAK DGAENTKKAV  180
SDPSPSSKSE KLKRWTLADE IKILEAFIRY VKTNGTQPGA LDLIAAVGDT LDRKNCSKVE  240
MYEKVRNLRL RYEKAVSTGT LPVKDDDLQK FKLSEVAWGA NAKEVASASI SQNDGAKGKK  300
AQTTEEKIEG DTKGRSSKSK KQGKYKEELE DNETTDTQIG VTLVRSNREK SDKKKMGGDA  360
DSLWPKVATE EMDTAANVKI IRKGFDELQN LYPNLSTYVE SIKAQHPCGE TLRRAFELID  420
DEKACILESK IKKQRVAEVK TEIRRADTKK EVANMLLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G083900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.10.0hepatoma-derived growth factor-related protein 2
TrEMBLI1I2T60.0I1I2T6_BRADI; Uncharacterized protein
STRINGBRADI3G20610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737