PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G005100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 24073.9 Da PI: 4.174 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 147.6 | 2.6e-46 | 60 | 159 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 l++fw++q ie+ td k h+lPlarikki+kadedv+m++ eaP++++kace+fileltlrswl+++en+r+tl+k+diaa+v+r d Brast03G005100.1.p 60 LQTFWANQmteIEQITDCKTHSLPLARIKKIMKADEDVQMVAGEAPAVFAKACEMFILELTLRSWLQTRENNRNTLQKNDIAAVVSRNDDL 150 89*****988889****************************************************************************** PP NF-YC 90 dflvdivpr 98 dflvd++ + Brast03G005100.1.p 151 DFLVDVMQE 159 *****9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.71E-27 | 41 | 153 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.0E-32 | 76 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-18 | 81 | 144 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDQHSQTKGE DVVMVSGAPS AGAAFPAGSN GDPAVYAATP LQQQLPIQQQ QGEDQHQQPL 60 QTFWANQMTE IEQITDCKTH SLPLARIKKI MKADEDVQMV AGEAPAVFAK ACEMFILELT 120 LRSWLQTREN NRNTLQKNDI AAVVSRNDDL DFLVDVMQEN GAVLPPATMQ TMVPGLGIPF 180 GMYGNQHPTA FAWPQPEQQP PPYNDEQQQQ PYNGGQDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-43 | 67 | 157 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G005100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571523.1 | 1e-116 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_014756175.1 | 1e-116 | nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q8LCG7 | 1e-50 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | I1I1W3 | 1e-115 | I1I1W3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G17790.1 | 1e-115 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20936 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-51 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G005100.1.p |
Publications ? help Back to Top | |||
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