PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G361100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 431aa    MW: 43640.6 Da    PI: 9.4534
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G361100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.2e-39117176362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         e+ lkcprC+s+ntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+ss
  Brast02G361100.1.p 117 EAGLKCPRCESSNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSS 176
                         6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-35100174IPR003851Zinc finger, Dof-type
PfamPF027012.4E-32119174IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.544120174IPR003851Zinc finger, Dof-type
PROSITE patternPS013610122158IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVFSSVPGYL DPPNWNNNNN NNNNNQQQQQ QQQQVQVQQL THGHGGLLFP SAVGGGVEAH  60
HHQQQQHQNQ QQQMPAALMA PPRPPDGGSS MGGGGTAAVK AGSMTDRARM AKIPAPEAGL  120
KCPRCESSNT KFCYFNNYSL TQPRHFCKAC RRYWTRGGAL RNVPVGGGCR RNKRSSKSSS  180
KSSSSSASAS AAAAGSAASS TTTGGGIMMP ALGQMPFFGA SLEGQYGGGG GGGLLAGASR  240
AAGLGFPGGM MGLGSQQPLD PAVDHYHHQI AGGGGGMGIG GMVEQWRLPP QMMQMQQFPF  300
FGGGRGADAM AGLQQQQQMP AGIGSYPFEP DAGDGSGEGF AAAGQMMGGG KQVPGSAGLI  360
TQLASVKMED NPPTAMAREF LGLPAAAAAG SLQFWAGGGN GGSGAGAPGG GGGWADRLAG  420
FNSSSSGNIL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G361100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044334e-74AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK0685424e-74AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043034e-74AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149594e-74AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAP0149634e-74AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-74CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559235.21e-141dof zinc finger protein DOF5.1 isoform X1
TrEMBLA0A0Q3KMT31e-139A0A0Q3KMT3_BRADI; Uncharacterized protein
STRINGBRADI1G03710.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-43DNA binding with one finger 2.4