PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G246400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 342aa    MW: 36574.2 Da    PI: 9.2731
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G246400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA981e-30172228158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  Brast02G246400.1.p 172 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGSGGRF 228
                         68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-33170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.225171231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-24174196IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27174228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMSFKSPEGF GQVAAVSQAS HGGGAPVPWW AVSQLLYGEP ASLSSPEAEA HRNGQFQGVP  60
RAQGILDPAP APTPKAAQPP AKSGAPEVLK FSVFQGNLES GGEGDKTMEH STTIALQSPL  120
PEYNSRFEFG PGQSMVSSNY PGADQCYGLL TTYAMKSMPG GRVLLPLNAP ADAPIYVNAK  180
QYEGILRRRR ARAKVERENQ LVKGRKPYLH ESRHRHAMRR ARGSGGRFLN TKKEGSGKVA  240
LGGDSKRTDC APPVRLATSP NSVIPQSQLG NPHSRSSISS LSGSEVSSMY DHEDVDHYNS  300
IEHLRTPFFT PLPIIMDGEH GGAAPFKWAT AADGCCELLK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-19172236266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212221RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G246400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561845.10.0nuclear transcription factor Y subunit A-10
TrEMBLI1GQ010.0I1GQ01_BRADI; Uncharacterized protein
STRINGBRADI1G13680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.35e-29nuclear factor Y, subunit A10