PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G103200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 162aa MW: 18505.9 Da PI: 8.2521 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.1e-21 | 64 | 124 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p ++++++++++l +++e++V++WFqNrRa+ k+ Brast02G103200.1.p 64 RQRWAPTQMQLQILESIFDQgNGTPRKQKIKDITAELsqhgNISETNVYNWFQNRRARSKR 124 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.4 | 1.3e-32 | 63 | 126 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Pt+ Q++iLe+++++G tP k++i++itaeL+++G+i+++NV++WFQNr+aR+++k+ Brast02G103200.1.p 63 ARQRWAPTQMQLQILESIFDQGNGTPRKQKIKDITAELSQHGNISETNVYNWFQNRRARSKRKK 126 789***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-16 | 58 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.495 | 60 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-11 | 62 | 129 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 63 | 127 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.8E-19 | 64 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.95E-12 | 64 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEVMTDEQME VLRKQISIYF TICEQIVGIH RTITSHQDSI AGMRLGNLYC DPLMVHGGHK 60 ITARQRWAPT QMQLQILESI FDQGNGTPRK QKIKDITAEL SQHGNISETN VYNWFQNRRA 120 RSKRKKSAFV PNNAESEAEA DEESPTEKKP KSDGPLHQNI W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G103200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564486.1 | 3e-95 | WUSCHEL-related homeobox 8 | ||||
Refseq | XP_020188039.1 | 2e-95 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-89 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A287LWF2 | 1e-96 | A0A287LWF2_HORVV; Uncharacterized protein | ||||
TrEMBL | M0X0X0 | 2e-96 | M0X0X0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56124.2 | 3e-97 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-56 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G103200.1.p |
Publications ? help Back to Top | |||
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