PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G098700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 847aa    MW: 95298.8 Da    PI: 4.6827
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G098700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.26.8e-19691981128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                         lp+G++F+P+d++l+  +L++++ +        ++++ik++d     ++++P+d+p  ++++ +  yfF+k+ k y++++ k        W
  Brast02G098700.1.p  69 LPRGVEFNPSDSDLL-WHLAAEIGNGLahrhPFISDFIKSTDqdggFCRTHPEDIP-GMRQDGHASYFFHKNLKLYNNENGKY-----ICW 152
                         699************.7788887766545543334456666555669*********.667788899********997643333.....35* PP

                 NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         +++g +++++  +g+l g+ +++v+y  k++++++++tdW +h+yr+
  Brast02G098700.1.p 153 QKSGASRSIIL-DGSLQGCMEVFVLYafKKSDNSPQRTDWKLHQYRI 198
                         ***********.999***********8878999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-2563216IPR003441NAC domain
PROSITE profilePS5100523.21569216IPR003441NAC domain
PfamPF023651.3E-770198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MASDVDSPPS RLGPDPVSDP LPLAERRTGF LRPPPARRME PSPPTPDRCE ASPAPEGTGG  60
PAPQIWPGLP RGVEFNPSDS DLLWHLAAEI GNGLAHRHPF ISDFIKSTDQ DGGFCRTHPE  120
DIPGMRQDGH ASYFFHKNLK LYNNENGKYI CWQKSGASRS IILDGSLQGC MEVFVLYAFK  180
KSDNSPQRTD WKLHQYRIKN TMEDEGELVV SKIFYKSQKN CCEWAAKAPV QSAQDDCVTE  240
NDSKEDNIDA QLENCSANMA TGSNFIEGDG NNQEQFLIKM YPDQDKLSFC KDVLDTTYIN  300
HENQINDHAE TDLDHISLQE RYRILLAEKN SFSAMVSAEK CVLNDSENVS RQMGAETSRY  360
HEGTAYREDI CSILQEISSA PPITDSMDTD NNTRLMGEIP QDNEISSMEC LVGNNEIPLD  420
PAQDTECPVS GKTLNSSVEL LSSKTPTGGD ENAHLAVRNA GFYLVDVKTE PALEGYEINP  480
SEYPRANDTH AAGSPSLGVK SEVTGCEFPG LCESNSINTL EPIVKKTHTR TLNHNGGLAY  540
CSHQRKKRKI ATDSSEKVLE EDAYKNDESI AYPSRRRRKK KTATDSIETA LEEDAPGLLQ  600
ILMDRGIMVK EIKLYDVEED DEMLPDCTES DFQDLENVIT KLFPPRVSLL KSTGRHLKGE  660
KAIYCLACLI SLIEQSRYLQ FRDCPVEWGW CRDLQSFVFV FRSHNRLVLE RPEYGYATYF  720
FEIAQSVPIE WQIRRLVVAM KLSSCGRTAL IENRPLLVGE DLTEGEAHVL EEYGWIPNTG  780
LGTMLNYRDR VVHDRWNEKY STDWKMKIGK LLMNGYSEGQ LIITHNPLKL ETLPEDSEEI  840
KLEDPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1574580RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G098700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228959.10.0uncharacterized protein LOC100826588 isoform X3
TrEMBLA0A0Q3HIZ70.0A0A0Q3HIZ7_BRADI; Uncharacterized protein
STRINGBRADI1G69617.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-39NAC family protein