PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast02G062100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 506aa MW: 53860.9 Da PI: 8.0456 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.5e-15 | 237 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Brast02G062100.1.p 237 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 296 789******************544454478446*************************98 PP | |||||||
2 | AP2 | 46.5 | 9.4e-15 | 341 | 390 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Brast02G062100.1.p 341 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 390 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.41E-19 | 237 | 306 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-17 | 237 | 306 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.716 | 238 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-29 | 238 | 310 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 238 | 296 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 238 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-5 | 239 | 250 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 339 | 399 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.55E-22 | 339 | 399 | No hit | No description |
SMART | SM00380 | 6.0E-33 | 340 | 404 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 340 | 398 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-18 | 340 | 398 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 341 | 390 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-5 | 380 | 400 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MDMNSGWLGF SLSSSSSAAP GYGGGEGGGG EGSCSSPAAA VAVGDSPAVA MQSLHSAGSV 60 QYDGPDWRHA EAKGPKLEDF MSVGYSSNNK SSPGIYDGTH ADELVHHAFP AGSYNFHGHG 120 GGIALDINMN APPPCAGFPD PRALAIAPQD QHHFLPAHHG AYSLCPPNNP NTMYNGAGFE 180 GSSMSISGIK SWLRQSMYMP PERSPPAAAL PAAPASEAAP PVPVHRKLAQ TFGQRTSQFR 240 GVTRHRWTGR YEAHLWDNTC RKEGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTH 300 INFPLSTYEK ELEEMKHMTR QEFIAHLRRN SSGFSRGASM YRGVTRHHQH GRWQARIGRV 360 AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIG KYDVKRISAS SHLIGGDLAC 420 RRSPTRGAPD APGVGIGIGA EAGASTADAA GSVDAHRGAH LLHGLQYAHA MKYEAGESSA 480 DHGAPGSWMA AAARAPLPVF ALWND* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast02G062100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT055767 | 0.0 | BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229108.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A0Q3LJD9 | 0.0 | A0A0Q3LJD9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G72890.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-116 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast02G062100.1.p |