PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G062100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 506aa    MW: 53860.9 Da    PI: 8.0456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15237296155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Brast02G062100.1.p 237 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 296
                         789******************544454478446*************************98 PP

2AP246.59.4e-15341390355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Brast02G062100.1.p 341 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 390
                         9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-19237306No hitNo description
SuperFamilySSF541718.5E-17237306IPR016177DNA-binding domain
PROSITE profilePS5103218.716238304IPR001471AP2/ERF domain
SMARTSM003804.2E-29238310IPR001471AP2/ERF domain
PfamPF008471.1E-11238296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15238305IPR001471AP2/ERF domain
PRINTSPR003672.5E-5239250IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17339399IPR016177DNA-binding domain
CDDcd000186.55E-22339399No hitNo description
SMARTSM003806.0E-33340404IPR001471AP2/ERF domain
PROSITE profilePS5103219.203340398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-18340398IPR001471AP2/ERF domain
PfamPF008471.3E-9341390IPR001471AP2/ERF domain
PRINTSPR003672.5E-5380400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDMNSGWLGF SLSSSSSAAP GYGGGEGGGG EGSCSSPAAA VAVGDSPAVA MQSLHSAGSV  60
QYDGPDWRHA EAKGPKLEDF MSVGYSSNNK SSPGIYDGTH ADELVHHAFP AGSYNFHGHG  120
GGIALDINMN APPPCAGFPD PRALAIAPQD QHHFLPAHHG AYSLCPPNNP NTMYNGAGFE  180
GSSMSISGIK SWLRQSMYMP PERSPPAAAL PAAPASEAAP PVPVHRKLAQ TFGQRTSQFR  240
GVTRHRWTGR YEAHLWDNTC RKEGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTH  300
INFPLSTYEK ELEEMKHMTR QEFIAHLRRN SSGFSRGASM YRGVTRHHQH GRWQARIGRV  360
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIG KYDVKRISAS SHLIGGDLAC  420
RRSPTRGAPD APGVGIGIGA EAGASTADAA GSVDAHRGAH LLHGLQYAHA MKYEAGESSA  480
DHGAPGSWMA AAARAPLPVF ALWND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G062100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229108.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0Q3LJD90.0A0A0Q3LJD9_BRADI; Uncharacterized protein
STRINGBRADI1G72890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein